RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 REM2Q8IYK8 340 aaPredicted RBP18.15■□□□□ 0.5
PCDHGC3-205ENST00000617641 DDX43Q9NXZ2 648 aaKnown RBP18.15■□□□□ 0.5
PCDHGC3-205ENST00000617641 BCCIPQ9P287 314 aaKnown RBP eCLIP18.15■□□□□ 0.5
PCDHGC3-205ENST00000617641 XPO1O14980 1071 aaKnown RBP18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 RIPK2O43353 540 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 ZNF623O75123 536 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 POMCP01189 267 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 ITGAVP06756 1048 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 EIF3BP55884 814 aaKnown RBP18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 CAV1Q03135 178 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 SKIDA1Q1XH10 827 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 PIGZQ86VD9 579 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 DUSP16Q9BY84 665 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 ADAM33Q9BZ11 813 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 RSAD1Q9HA92 442 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 CYLDQ9NQC7 956 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 A0A0U1RQF3 1178 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 SGK1O00141 431 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 BEST1O76090 585 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 ENDOD1O94919 500 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 PECAM1P16284 738 aaPredicted RBP18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 ACADSBP45954 432 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 ATP1A2P50993 1020 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 RAB27AP51159 221 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 HDAC4P56524 1084 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 DPYSL3Q14195 570 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 ZC3H12AQ5D1E8 599 aaKnown RBP18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 DSTYKQ6XUX3 929 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 NDRG1Q92597 394 aaKnown RBP18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 HSFY1Q96LI6 401 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 DDX23Q9BUQ8 820 aaKnown RBP18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 CDC42EP4Q9H3Q1 356 aaKnown RBP18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 CRTAC1Q9NQ79 661 aa18.14■□□□□ 0.49
PCDHGC3-205ENST00000617641 CABYRO75952 493 aa18.13■□□□□ 0.49
PCDHGC3-205ENST00000617641 NR1D1P20393 614 aa18.13■□□□□ 0.49
PCDHGC3-205ENST00000617641 ADIGQ0VDE8 80 aa18.13■□□□□ 0.49
PCDHGC3-205ENST00000617641 FAM26DQ5JW98 314 aa18.13■□□□□ 0.49
PCDHGC3-205ENST00000617641 TTC13Q8NBP0 860 aa18.13■□□□□ 0.49
PCDHGC3-205ENST00000617641 BBOF1Q8ND07 529 aa18.13■□□□□ 0.49
PCDHGC3-205ENST00000617641 MED10Q9BTT4 135 aa18.13■□□□□ 0.49
PCDHGC3-205ENST00000617641 TRPV6Q9H1D0 765 aa18.13■□□□□ 0.49
PCDHGC3-205ENST00000617641 ADAM7Q9H2U9 754 aa18.13■□□□□ 0.49
PCDHGC3-205ENST00000617641 INPP5FQ9Y2H2 1132 aa18.13■□□□□ 0.49
PCDHGC3-205ENST00000617641 I3L4J1 428 aa18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 IFNB1P01574 187 aa18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 FAM163BP0C2L3 166 aa18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 NPR3P17342 541 aa18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 ATXN1P54253 815 aaKnown RBP18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 GPS1Q13098 491 aa18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 KRT81Q14533 505 aa18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 CA9Q16790 459 aa18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 UPP1Q16831 310 aa18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 HIBCHQ6NVY1 386 aaPredicted RBP18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 CCHCR1Q8TD31 782 aa18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 SNRNP25Q9BV90 132 aaKnown RBP18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 CFHR5Q9BXR6 569 aa18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 RPL9P32969 192 aaKnown RBP18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 SCNN1AP37088 669 aa18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 PTPN9P43378 593 aa18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 PAN2Q504Q3 1202 aaKnown RBP18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 BOLA3Q53S33 107 aa18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 TTC19Q6DKK2 380 aaPredicted RBP18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 NPNTQ6UXI9 565 aa18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 TRMT10CQ7L0Y3 403 aaKnown RBP18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 TMEM86AQ8N2M4 240 aa18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 GLT1D1Q96MS3 346 aa18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 SYT15Q9BQS2 421 aa18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 MAK16Q9BXY0 300 aaKnown RBP18.12■□□□□ 0.49
PCDHGC3-205ENST00000617641 APOC4-APOC2K7ER74 178 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 DNALI1O14645 258 aaPredicted RBP18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 CAND2O75155 1236 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 ACSL3O95573 720 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 APOC2P02655 101 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 INHAP05111 366 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 DESP17661 470 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 HPDP32754 393 aaPredicted RBP18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 LHX1P48742 406 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 RABGGTBP53611 331 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 GDF10P55107 478 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 SLC8A3P57103 927 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 TIGD5Q53EQ6 642 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 AGBL2Q5U5Z8 902 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 KDM7AQ6ZMT4 941 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 CLEC20AQ6ZU45 233 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 TEKT4Q8WW24 435 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 C11orf84Q9BUA3 381 aaPredicted RBP18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 FRMD8P1Q9BZ68 369 aaPredicted RBP18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 PCDH9Q9HC56 1237 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 KRT82Q9NSB4 513 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 NOVA2Q9UNW9 492 aaKnown RBP18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 SMIM23A6NLE4 172 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 CKBP12277 381 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 MAP3K7CLP57077 242 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 EIF3EP60228 445 aaKnown RBP18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 SKOR1P84550 965 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 CAPS2Q9BXY5 557 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 PCDH18Q9HCL0 1135 aa18.11■□□□□ 0.49
PCDHGC3-205ENST00000617641 MYBPHLA2RUH7 354 aa18.1■□□□□ 0.49
PCDHGC3-205ENST00000617641 DCDC2CA8MYV0 355 aa18.1■□□□□ 0.49
PCDHGC3-205ENST00000617641 SHOX2O60902 331 aaPredicted RBP18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms