RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 PAQR9Q6ZVX9 377 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 UNC93AQ86WB7 457 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 ARID3BQ8IVW6 561 aaPredicted RBP11.92□□□□□ -0.5
SMAD4-211ENST00000590499 MFSD6LQ8IWD5 586 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 SCN4BQ8IWT1 228 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 TRIML1Q8N9V2 468 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 PRSS33Q8NF86 280 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 DEPDC1BQ8WUY9 529 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 NELFBQ8WX92 580 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 SLC35C1Q96A29 364 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 E2F7Q96AV8 911 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 C8orf48Q96LL4 319 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 CEP63Q96MT8 703 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 LRRC3BQ96PB8 259 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 DDX23Q9BUQ8 820 aaKnown RBP11.92□□□□□ -0.5
SMAD4-211ENST00000590499 SLC46A2Q9BY10 475 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 ZNF518BQ9C0D4 1074 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 ELOVL4Q9GZR5 314 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 NIF3L1Q9GZT8 377 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 MMRN2Q9H8L6 949 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 CYP3A43Q9HB55 503 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 OBP2AQ9NY56 170 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 ZMYM5Q9UJ78 669 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 COQ4Q9Y3A0 265 aa11.92□□□□□ -0.5
SMAD4-211ENST00000590499 CACNA1IQ9P0X4 2223 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 SHISA7A6NL88 538 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 F8VP50 259 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 CLDN5O00501 218 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 PI15O43692 258 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 STX10O60499 249 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 PSMC3P17980 439 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 DDX6P26196 483 aaKnown RBP eCLIP11.91□□□□□ -0.5
SMAD4-211ENST00000590499 NDST1P52848 882 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 MLF2Q15773 248 aaPredicted RBP11.91□□□□□ -0.5
SMAD4-211ENST00000590499 CAMK4Q16566 473 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 PPP1R26Q5T8A7 1209 aaPredicted RBP11.91□□□□□ -0.5
SMAD4-211ENST00000590499 ZNF385CQ66K41 422 aaPredicted RBP11.91□□□□□ -0.5
SMAD4-211ENST00000590499 KLHL10Q6JEL2 608 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 FRMD5Q7Z6J6 570 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 FILIP1Q7Z7B0 1213 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 FAM35AQ86V20 835 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 MON1AQ86VX9 555 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 FUKQ8N0W3 1084 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 CRYBG2Q8N1P7 616 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 FBXL13Q8NEE6 735 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 FLCNQ8NFG4 579 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 DNASE1L2Q92874 299 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 FAXDC2Q96IV6 333 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 TNIP3Q96KP6 325 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 GCNAQ96QF7 691 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 TWNKQ96RR1 684 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 TRMT61BQ9BVS5 477 aaKnown RBP11.91□□□□□ -0.5
SMAD4-211ENST00000590499 TTLL2Q9BWV7 592 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 IMPG2Q9BZV3 1241 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 MFSD1Q9H3U5 465 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 TBC1D17Q9HA65 648 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 TRPV5Q9NQA5 729 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.91□□□□□ -0.5
SMAD4-211ENST00000590499 RAB20Q9NX57 234 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 UXTQ9UBK9 157 aaPredicted RBP11.91□□□□□ -0.5
SMAD4-211ENST00000590499 ARMCX3Q9UH62 379 aaPredicted RBP11.91□□□□□ -0.5
SMAD4-211ENST00000590499 MAGED2Q9UNF1 606 aaPredicted RBP11.91□□□□□ -0.5
SMAD4-211ENST00000590499 CTNND2Q9UQB3 1225 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 USP34Q70CQ2 3546 aa11.91□□□□□ -0.5
SMAD4-211ENST00000590499 BICDL2A1A5D9 508 aa11.9□□□□□ -0.5
SMAD4-211ENST00000590499 CILPO75339 1184 aa11.9□□□□□ -0.5
SMAD4-211ENST00000590499 CLSTN1O94985 981 aa11.9□□□□□ -0.5
SMAD4-211ENST00000590499 GDI1P31150 447 aa11.9□□□□□ -0.5
SMAD4-211ENST00000590499 GRIK1P39086 918 aa11.9□□□□□ -0.5
SMAD4-211ENST00000590499 PRKCQQ04759 706 aa11.9□□□□□ -0.5
SMAD4-211ENST00000590499 TCF15Q12870 199 aa11.9□□□□□ -0.5
SMAD4-211ENST00000590499 PAK1Q13153 545 aa11.9□□□□□ -0.5
SMAD4-211ENST00000590499 ORC1Q13415 861 aa11.9□□□□□ -0.5
SMAD4-211ENST00000590499 SLC44A4Q53GD3 710 aa11.9□□□□□ -0.5
SMAD4-211ENST00000590499 DCAF17Q5H9S7 520 aaPredicted RBP11.9□□□□□ -0.5
SMAD4-211ENST00000590499 TXNDC8Q6A555 127 aa11.9□□□□□ -0.5
SMAD4-211ENST00000590499 DENND5BQ6ZUT9 1274 aa11.9□□□□□ -0.5
SMAD4-211ENST00000590499 ACOT1Q86TX2 421 aa11.9□□□□□ -0.5
SMAD4-211ENST00000590499 CMTM8Q8IZV2 173 aa11.9□□□□□ -0.5
SMAD4-211ENST00000590499 WHAMMQ8TF30 809 aa11.9□□□□□ -0.5
SMAD4-211ENST00000590499 CLSTN2Q9H4D0 955 aa11.9□□□□□ -0.5
SMAD4-211ENST00000590499 METTL14Q9HCE5 456 aaKnown RBP11.9□□□□□ -0.5
SMAD4-211ENST00000590499 LMBRD1Q9NUN5 540 aa11.9□□□□□ -0.5
SMAD4-211ENST00000590499 DLGAP2Q9P1A6 1054 aa11.9□□□□□ -0.5
SMAD4-211ENST00000590499 DNMT3AQ9Y6K1 912 aaPredicted RBP11.9□□□□□ -0.5
SMAD4-211ENST00000590499 TNFRSF10BO14763 440 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 PMM2O15305 246 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 ANXA13P27216 316 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 MARSP56192 900 aaKnown RBP11.89□□□□□ -0.51
SMAD4-211ENST00000590499 STX17P56962 302 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 ZNF268Q14587 947 aaPredicted RBP11.89□□□□□ -0.51
SMAD4-211ENST00000590499 TCERG1LQ5VWI1 586 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 MAB21L3Q8N8X9 362 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 ZMIZ2Q8NF64 920 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 RIN3Q8TB24 985 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 MRPS31Q92665 395 aaKnown RBP11.89□□□□□ -0.51
SMAD4-211ENST00000590499 USP13Q92995 863 aaPredicted RBP11.89□□□□□ -0.51
SMAD4-211ENST00000590499 SMARCD1Q96GM5 515 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 MED15Q96RN5 788 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 SLC22A12Q96S37 553 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms