RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 PIK3R2O00459 728 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 KIF5CO60282 957 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 CLASP2O75122 1294 aaKnown RBP11.28□□□□□ -0.6
SS18-213ENST00000579640 TUBB4AP04350 444 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 CSH1P0DML2 217 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 CSH2P0DML3 217 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 CLCN4P51793 760 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 NAP1L1P55209 391 aaKnown RBP11.28□□□□□ -0.6
SS18-213ENST00000579640 DAOAP59103 153 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 VEPH1Q14D04 833 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 PPP1R15BQ5SWA1 713 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 DCUN1D2Q6PH85 259 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 GPRIN1Q7Z2K8 1008 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 C17orf53Q8N3J3 647 aaPredicted RBP11.28□□□□□ -0.6
SS18-213ENST00000579640 KREMEN2Q8NCW0 462 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 MRPL38Q96DV4 380 aaKnown RBP11.28□□□□□ -0.6
SS18-213ENST00000579640 CDCA3Q99618 268 aaPredicted RBP11.28□□□□□ -0.6
SS18-213ENST00000579640 ULBP1Q9BZM6 244 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 PLEKHA4Q9H4M7 779 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 ZNF576Q9H609 170 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 TRIM10Q9UDY6 481 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 COLQQ9Y215 455 aaPredicted RBP11.28□□□□□ -0.6
SS18-213ENST00000579640 INSL5Q9Y5Q6 135 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 DUSP10Q9Y6W6 482 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 FAM92AA1XBS5 289 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 EPOPA6NHQ4 379 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 HSF2BPO75031 334 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 CSPG5O95196 566 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 ATF6P18850 670 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 GPR15P49685 360 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 EPHB3P54753 998 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 PHLDB2Q86SQ0 1253 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 ITIH5Q86UX2 942 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 ARHGAP18Q8N392 663 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 TRIM58Q8NG06 486 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 FNIP1Q8TF40 1166 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 UBE2Q2Q8WVN8 375 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 GOLGA1Q92805 767 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 ALS2CR12Q96Q35 445 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 OSGEPQ9NPF4 335 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 METTL5Q9NRN9 209 aaKnown RBP11.28□□□□□ -0.6
SS18-213ENST00000579640 SALL4Q9UJQ4 1053 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 COG5Q9UP83 839 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 SCML2Q9UQR0 700 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 ASB3Q9Y575 518 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 PCDHGC5Q9Y5F6 944 aa11.28□□□□□ -0.6
SS18-213ENST00000579640 COL4A4P53420 1690 aaPredicted RBP11.27□□□□□ -0.6
SS18-213ENST00000579640 PLXNA3P51805 1871 aa11.27□□□□□ -0.6
SS18-213ENST00000579640 MTCL1Q9Y4B5 1905 aaKnown RBP11.27□□□□□ -0.6
SS18-213ENST00000579640 TMEM191CA6NGB0 347 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 SLC38A8A6NNN8 435 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 KIF2AO00139 706 aaPredicted RBP11.27□□□□□ -0.61
SS18-213ENST00000579640 MYO1FO00160 1098 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 BUB1O43683 1085 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 SOAT2O75908 522 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 ABL1P00519 1130 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 C8AP07357 584 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 USP17L7P0C7H9 530 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 DESP17661 470 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 YWHAQP27348 245 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 SDHAF4Q5VUM1 108 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 LLGL2Q6P1M3 1020 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 BEND5Q7L4P6 421 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 SYCE1Q8N0S2 351 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 TPCN2Q8NHX9 752 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 SCAMP5Q8TAC9 235 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 SLC22A17Q8WUG5 538 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 MCEEQ96PE7 176 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 TTLL2Q9BWV7 592 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 TLE6Q9H808 572 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 LMCD1Q9NZU5 365 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 IP6K2Q9UHH9 426 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 ANAPC7Q9UJX3 599 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 TMEM59LQ9UK28 342 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 PAXBP1Q9Y5B6 917 aa11.27□□□□□ -0.61
SS18-213ENST00000579640 ZNF500O60304 480 aaPredicted RBP11.26□□□□□ -0.61
SS18-213ENST00000579640 DAB1O75553 588 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 MOCS3O95396 460 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 LRG1P02750 347 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 HOXA9P31269 272 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 PSEN1P49768 467 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 YWHAZP63104 245 aaKnown RBP11.26□□□□□ -0.61
SS18-213ENST00000579640 TWF1Q12792 350 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 TAF12Q16514 161 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 DUSP6Q16828 381 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 C11orf63Q6NUN7 778 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 MON1AQ86VX9 555 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 ELMOD1Q8N336 334 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 PDZD8Q8NEN9 1154 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 SLC7A14Q8TBB6 771 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 GIPC2Q8TF65 315 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 CLEC4CQ8WTT0 213 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 OVCA2Q8WZ82 227 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 FAM149B1Q96BN6 582 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 TRMT2BQ96GJ1 504 aaKnown RBP11.26□□□□□ -0.61
SS18-213ENST00000579640 MYRFLQ96LU7 910 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 POPDC2Q9HBU9 364 aa11.26□□□□□ -0.61
SS18-213ENST00000579640 UXTQ9UBK9 157 aaPredicted RBP11.26□□□□□ -0.61
SS18-213ENST00000579640 CHORDC1Q9UHD1 332 aaPredicted RBP11.26□□□□□ -0.61
SS18-213ENST00000579640 GREB1Q4ZG55 1949 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms