RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 SOX5P35711 763 aa21.74■■□□□ 1.07
VPS53-210ENST00000571456 BST2Q10589 180 aaKnown RBP21.74■■□□□ 1.07
VPS53-210ENST00000571456 TRIM14Q14142 442 aa21.74■■□□□ 1.07
VPS53-210ENST00000571456 DDR2Q16832 855 aa21.74■■□□□ 1.07
VPS53-210ENST00000571456 CCDC142Q17RM4 750 aa21.74■■□□□ 1.07
VPS53-210ENST00000571456 CLEC20AQ6ZU45 233 aa21.74■■□□□ 1.07
VPS53-210ENST00000571456 PDZD4Q76G19 769 aaPredicted RBP21.74■■□□□ 1.07
VPS53-210ENST00000571456 NUP93Q8N1F7 819 aa21.74■■□□□ 1.07
VPS53-210ENST00000571456 TTLL2Q9BWV7 592 aa21.74■■□□□ 1.07
VPS53-210ENST00000571456 GPR88Q9GZN0 384 aa21.74■■□□□ 1.07
VPS53-210ENST00000571456 RBSNQ9H1K0 784 aa21.74■■□□□ 1.07
VPS53-210ENST00000571456 FBXO44Q9H4M3 255 aa21.74■■□□□ 1.07
VPS53-210ENST00000571456 DNMT3BQ9UBC3 853 aaKnown RBP21.74■■□□□ 1.07
VPS53-210ENST00000571456 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.74■■□□□ 1.07
VPS53-210ENST00000571456 ZNF638Q14966 1978 aaKnown RBP21.74■■□□□ 1.07
VPS53-210ENST00000571456 SLC38A8A6NNN8 435 aa21.73■■□□□ 1.07
VPS53-210ENST00000571456 RHOP08100 348 aa21.73■■□□□ 1.07
VPS53-210ENST00000571456 KLK7P49862 253 aa21.73■■□□□ 1.07
VPS53-210ENST00000571456 GRASPQ7Z6J2 395 aaPredicted RBP21.73■■□□□ 1.07
VPS53-210ENST00000571456 ZNF397Q8NF99 534 aaPredicted RBP21.73■■□□□ 1.07
VPS53-210ENST00000571456 ZNF606Q8WXB4 792 aa21.73■■□□□ 1.07
VPS53-210ENST00000571456 OVCA2Q8WZ82 227 aa21.73■■□□□ 1.07
VPS53-210ENST00000571456 GCNAQ96QF7 691 aa21.73■■□□□ 1.07
VPS53-210ENST00000571456 LPIN3Q9BQK8 851 aa21.73■■□□□ 1.07
VPS53-210ENST00000571456 CORO1BQ9BR76 489 aa21.73■■□□□ 1.07
VPS53-210ENST00000571456 TBC1D17Q9HA65 648 aa21.73■■□□□ 1.07
VPS53-210ENST00000571456 NLRC4Q9NPP4 1024 aa21.73■■□□□ 1.07
VPS53-210ENST00000571456 PCDHGC3Q9UN70 934 aa21.73■■□□□ 1.07
VPS53-210ENST00000571456 DOCK6Q96HP0 2047 aa21.72■■□□□ 1.07
VPS53-210ENST00000571456 NOTCH4Q99466 2003 aa21.72■■□□□ 1.07
VPS53-210ENST00000571456 XPO1O14980 1071 aaKnown RBP21.72■■□□□ 1.07
VPS53-210ENST00000571456 CYP26A1O43174 497 aa21.72■■□□□ 1.07
VPS53-210ENST00000571456 THAP12O43422 761 aa21.72■■□□□ 1.07
VPS53-210ENST00000571456 FERP16591 822 aa21.72■■□□□ 1.07
VPS53-210ENST00000571456 CLCN1P35523 988 aa21.72■■□□□ 1.07
VPS53-210ENST00000571456 PDE6CP51160 858 aa21.72■■□□□ 1.07
VPS53-210ENST00000571456 GOLGA7BQ2TAP0 167 aa21.72■■□□□ 1.07
VPS53-210ENST00000571456 C1orf210Q8IVY1 113 aa21.72■■□□□ 1.07
VPS53-210ENST00000571456 GPR161Q8N6U8 529 aaKnown RBP21.72■■□□□ 1.07
VPS53-210ENST00000571456 PDZD8Q8NEN9 1154 aa21.72■■□□□ 1.07
VPS53-210ENST00000571456 FEZF2Q8TBJ5 459 aa21.72■■□□□ 1.07
VPS53-210ENST00000571456 SLITRK1Q96PX8 696 aa21.72■■□□□ 1.07
VPS53-210ENST00000571456 SMOQ99835 787 aa21.72■■□□□ 1.07
VPS53-210ENST00000571456 CYLDQ9NQC7 956 aa21.72■■□□□ 1.07
VPS53-210ENST00000571456 IL37Q9NZH6 218 aa21.72■■□□□ 1.07
VPS53-210ENST00000571456 AJAP1Q9UKB5 411 aaPredicted RBP21.72■■□□□ 1.07
VPS53-210ENST00000571456 CEP83Q9Y592 693 aa21.72■■□□□ 1.07
VPS53-210ENST00000571456 NCANO14594 1321 aa21.72■■□□□ 1.07
VPS53-210ENST00000571456 DENND4CQ5VZ89 1909 aa21.72■■□□□ 1.07
VPS53-210ENST00000571456 EPHB6O15197 1021 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 SOAT2O75908 522 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 DCNP07585 359 aaKnown RBP21.71■■□□□ 1.07
VPS53-210ENST00000571456 HMGA1P17096 107 aaKnown RBP21.71■■□□□ 1.07
VPS53-210ENST00000571456 PFKLP17858 780 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 FSHRP23945 695 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 DDX6P26196 483 aaKnown RBP eCLIP21.71■■□□□ 1.07
VPS53-210ENST00000571456 PLA2G4AP47712 749 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 MAP3K7CLP57077 242 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 SNX16P57768 344 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 PKDCCQ504Y2 493 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 SPECC1LQ69YQ0 1117 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 GAS2L3Q86XJ1 694 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 GIPC2Q8TF65 315 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 STK32AQ8WU08 396 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 TFAP2BQ92481 460 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 HSFY1Q96LI6 401 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 LRRC3Q9BY71 257 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 TRIM5Q9C035 493 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 TTYH3Q9C0H2 523 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 LHX5Q9H2C1 402 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 NCDNQ9UBB6 729 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 CA14Q9ULX7 337 aa21.71■■□□□ 1.07
VPS53-210ENST00000571456 MRPS23Q9Y3D9 190 aaKnown RBP21.71■■□□□ 1.07
VPS53-210ENST00000571456 DOCK8Q8NF50 2099 aa21.7■■□□□ 1.06
VPS53-210ENST00000571456 FAM92AA1XBS5 289 aa21.7■■□□□ 1.06
VPS53-210ENST00000571456 TNFRSF10BO14763 440 aa21.7■■□□□ 1.06
VPS53-210ENST00000571456 TPM1P09493 284 aa21.7■■□□□ 1.06
VPS53-210ENST00000571456 CYP11B1P15538 503 aa21.7■■□□□ 1.06
VPS53-210ENST00000571456 BRD2P25440 801 aaKnown RBP21.7■■□□□ 1.06
VPS53-210ENST00000571456 KRT9P35527 623 aa21.7■■□□□ 1.06
VPS53-210ENST00000571456 ARHGAP15Q53QZ3 475 aa21.7■■□□□ 1.06
VPS53-210ENST00000571456 PRSS36Q5K4E3 855 aa21.7■■□□□ 1.06
VPS53-210ENST00000571456 TMC8Q8IU68 726 aa21.7■■□□□ 1.06
VPS53-210ENST00000571456 ZMIZ2Q8NF64 920 aa21.7■■□□□ 1.06
VPS53-210ENST00000571456 KCTD13Q8WZ19 329 aa21.7■■□□□ 1.06
VPS53-210ENST00000571456 NOX5Q96PH1 765 aa21.7■■□□□ 1.06
VPS53-210ENST00000571456 KCNK16Q96T55 309 aa21.7■■□□□ 1.06
VPS53-210ENST00000571456 GDE1Q9NZC3 331 aa21.7■■□□□ 1.06
VPS53-210ENST00000571456 DLGAP2Q9P1A6 1054 aa21.7■■□□□ 1.06
VPS53-210ENST00000571456 CDV3Q9UKY7 258 aaKnown RBP21.7■■□□□ 1.06
VPS53-210ENST00000571456 SIT1Q9Y3P8 196 aa21.7■■□□□ 1.06
VPS53-210ENST00000571456 ANKRD11Q6UB99 2663 aaPredicted RBP21.69■■□□□ 1.06
VPS53-210ENST00000571456 MIA3Q5JRA6 1907 aa21.69■■□□□ 1.06
VPS53-210ENST00000571456 PRR5-ARHGAP8B1AHC4 643 aa21.69■■□□□ 1.06
VPS53-210ENST00000571456 M0QYV0 167 aa21.69■■□□□ 1.06
VPS53-210ENST00000571456 YWHAQP27348 245 aa21.69■■□□□ 1.06
VPS53-210ENST00000571456 GPR15P49685 360 aa21.69■■□□□ 1.06
VPS53-210ENST00000571456 SLC5A3P53794 718 aa21.69■■□□□ 1.06
VPS53-210ENST00000571456 CACNA2D1P54289 1103 aa21.69■■□□□ 1.06
VPS53-210ENST00000571456 ARHGAP8P85298 464 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms