RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 CDH19Q9H159 772 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 ZMAT3Q9HA38 289 aaKnown RBP3.54□□□□□ -1.84
VPS35-207ENST00000568191 C1orf112Q9NSG2 853 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 SACM1LQ9NTJ5 587 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 TRNAU1APQ9NX07 287 aaKnown RBP3.54□□□□□ -1.84
VPS35-207ENST00000568191 ZIM2Q9NZV7 527 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 MGAT4CQ9UBM8 478 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 HDAC9Q9UKV0 1011 aa3.54□□□□□ -1.84
VPS35-207ENST00000568191 AQP7P3A6NL99 342 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 SOCS2O14508 198 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 SNX2O60749 519 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 SRGAP2O75044 1071 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 TUSC2O75896 110 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 SNHG28P0DPA3 235 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 BRAFP15056 766 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 ZKSCAN1P17029 563 aaPredicted RBP3.53□□□□□ -1.84
VPS35-207ENST00000568191 SCP2P22307 547 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 KLRC1P26715 233 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 COPB1P53618 953 aaKnown RBP3.53□□□□□ -1.84
VPS35-207ENST00000568191 SLC29A2Q14542 456 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 ZIK1Q3SY52 487 aaPredicted RBP3.53□□□□□ -1.84
VPS35-207ENST00000568191 CC2D1BQ5T0F9 858 aaKnown RBP3.53□□□□□ -1.84
VPS35-207ENST00000568191 DCAF12L1Q5VU92 463 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 MZT2AQ6P582 158 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 NPNTQ6UXI9 565 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 BCDIN3DQ7Z5W3 292 aaKnown RBP3.53□□□□□ -1.84
VPS35-207ENST00000568191 YAF2Q8IY57 180 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 PPP1R35Q8TAP8 253 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 OSR1Q8TAX0 266 aaPredicted RBP3.53□□□□□ -1.84
VPS35-207ENST00000568191 DNAJB14Q8TBM8 379 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 STAG1Q8WVM7 1258 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 VN1R3Q9BXE9 311 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 TRIM5Q9C035 493 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 TMEM60Q9H2L4 133 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 FAM83DQ9H4H8 585 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 PDGFCQ9NRA1 345 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 NKX1-2Q9UD57 310 aaPredicted RBP3.53□□□□□ -1.84
VPS35-207ENST00000568191 TCEAL9Q9UHQ7 104 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 SCAF8Q9UPN6 1271 aaKnown RBP3.53□□□□□ -1.84
VPS35-207ENST00000568191 CDY1Q9Y6F8 540 aa3.53□□□□□ -1.84
VPS35-207ENST00000568191 GOLGA6CA6NDK9 693 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 GOLGA6BA6NDN3 693 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 KRTAP29-1A8MX34 341 aaPredicted RBP3.52□□□□□ -1.85
VPS35-207ENST00000568191 E5RJQ4 531 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 PYCARD-AS1I3L0S3 204 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 MGEA5O60502 916 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 USP12O75317 370 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 BCAR3O75815 825 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 VNN1O95497 513 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 TOP3BO95985 862 aaKnown RBP3.52□□□□□ -1.85
VPS35-207ENST00000568191 GOLGA6DP0CG33 693 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 HOXB6P17509 224 aaKnown RBP3.52□□□□□ -1.85
VPS35-207ENST00000568191 ATP5F1P24539 256 aaPredicted RBP3.52□□□□□ -1.85
VPS35-207ENST00000568191 FPR3P25089 353 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 UQCRC1P31930 480 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 NR4A2P43354 598 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 GATMP50440 423 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 SUMO3P55854 103 aaPredicted RBP3.52□□□□□ -1.85
VPS35-207ENST00000568191 ARHGEF7Q14155 803 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 TWIST1Q15672 202 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 CYP1B1Q16678 543 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 ARHGAP29Q52LW3 1261 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 RNASE12Q5GAN4 147 aaKnown RBP3.52□□□□□ -1.85
VPS35-207ENST00000568191 SHC4Q6S5L8 630 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 B3GNT9Q6UX72 402 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 DPY19L3Q6ZPD9 716 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 CHPFQ8IZ52 775 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 SDR16C5Q8N3Y7 309 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 C9orf106Q8NAJ2 232 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 IL31RAQ8NI17 732 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 ZNF48Q96MX3 618 aaPredicted RBP3.52□□□□□ -1.85
VPS35-207ENST00000568191 NT5C1BQ96P26 610 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 EFHD1Q9BUP0 239 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 STK31Q9BXU1 1019 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 B3GNT5Q9BYG0 378 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 LRRC27Q9C0I9 530 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 DHX36Q9H2U1 1008 aaKnown RBP3.52□□□□□ -1.85
VPS35-207ENST00000568191 ZNF287Q9HBT7 754 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 GOLGA6AQ9NYA3 693 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 AFF4Q9UHB7 1163 aaKnown RBP3.52□□□□□ -1.85
VPS35-207ENST00000568191 OGDHLQ9ULD0 1010 aa3.52□□□□□ -1.85
VPS35-207ENST00000568191 TCRBV5S1A1TA0A578 114 aa3.51□□□□□ -1.85
VPS35-207ENST00000568191 CD3EAPO15446 510 aaKnown RBP3.51□□□□□ -1.85
VPS35-207ENST00000568191 FRS3O43559 492 aa3.51□□□□□ -1.85
VPS35-207ENST00000568191 PIAS2O75928 621 aa3.51□□□□□ -1.85
VPS35-207ENST00000568191 CD63P08962 238 aa3.51□□□□□ -1.85
VPS35-207ENST00000568191 TPH1P17752 444 aa3.51□□□□□ -1.85
VPS35-207ENST00000568191 PTDSS1P48651 473 aaKnown RBP3.51□□□□□ -1.85
VPS35-207ENST00000568191 TIRAPP58753 221 aa3.51□□□□□ -1.85
VPS35-207ENST00000568191 LMAN2Q12907 356 aa3.51□□□□□ -1.85
VPS35-207ENST00000568191 FHL1Q13642 323 aa3.51□□□□□ -1.85
VPS35-207ENST00000568191 ST3GAL2Q16842 350 aa3.51□□□□□ -1.85
VPS35-207ENST00000568191 PTCHD3Q3KNS1 767 aa3.51□□□□□ -1.85
VPS35-207ENST00000568191 ODR4Q5SWX8 454 aa3.51□□□□□ -1.85
VPS35-207ENST00000568191 MEX3CQ5U5Q3 659 aaKnown RBP3.51□□□□□ -1.85
VPS35-207ENST00000568191 DCDC5Q6ZRR9 648 aa3.51□□□□□ -1.85
VPS35-207ENST00000568191 EPM2AIP1Q7L775 607 aaPredicted RBP3.51□□□□□ -1.85
VPS35-207ENST00000568191 C16orf52Q8NHV5 167 aa3.51□□□□□ -1.85
VPS35-207ENST00000568191 NSMCE1Q8WV22 266 aa3.51□□□□□ -1.85
VPS35-207ENST00000568191 SMURF2Q9HAU4 748 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms