RNA–Protein interactions for RNA: ENST00000568169.5

TCF4-238, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-238	ENST00000568169	GPD1L	Q8N335	351 aa		12.14	□□□□□ -0.47
TCF4-238	ENST00000568169	OR5B17	Q8NGF7	314 aa		12.14	□□□□□ -0.47
TCF4-238	ENST00000568169	MYCBPAP	Q8TBZ2	947 aa		12.14	□□□□□ -0.47
TCF4-238	ENST00000568169	ANKRD36BP1	Q96IX9	119 aa		12.14	□□□□□ -0.47
TCF4-238	ENST00000568169	TMX3	Q96JJ7	454 aa		12.14	□□□□□ -0.47
TCF4-238	ENST00000568169	C8orf48	Q96LL4	319 aa		12.14	□□□□□ -0.47
TCF4-238	ENST00000568169	CAPN10	Q9HC96	672 aa		12.14	□□□□□ -0.47
TCF4-238	ENST00000568169	ZDHHC4	Q9NPG8	344 aa		12.14	□□□□□ -0.47
TCF4-238	ENST00000568169	TBC1D14	Q9P2M4	693 aa		12.14	□□□□□ -0.47
TCF4-238	ENST00000568169	NME7	Q9Y5B8	376 aa		12.14	□□□□□ -0.47
TCF4-238	ENST00000568169	ASXL3	Q9C0F0	2248 aa		12.14	□□□□□ -0.47
TCF4-238	ENST00000568169	ATXN2	Q99700	1313 aa	Known RBP	12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	TCRBV21S2A2	A0A5A6	115 aa		12.13	□□□□□ -0.47
TCF4-238	ENST00000568169		F8VP50	259 aa		12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	TAF4	O00268	1085 aa		12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	CAPNS1	P04632	268 aa		12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	CFI	P05156	583 aa		12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	SERPINF2	P08697	491 aa		12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	KDSR	Q06136	332 aa		12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	LY6G5C	Q5SRR4	150 aa		12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	BRAP	Q7Z569	592 aa		12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	DDX42	Q86XP3	938 aa	Known RBP eCLIP	12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	ETFBKMT	Q8IXQ9	262 aa		12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	PGBD3	Q8N328	593 aa		12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	HDDC3	Q8N4P3	179 aa		12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	CEP76	Q8TAP6	659 aa		12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	KCNV2	Q8TDN2	545 aa		12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	FGFBP2	Q9BYJ0	223 aa		12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	PCIF1	Q9H4Z3	704 aa		12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	TMEM30A	Q9NV96	361 aa		12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	CCDC39	Q9UFE4	941 aa		12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	R3HCC1	Q9Y3T6	440 aa	Known RBP	12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	URB1	O60287	2271 aa	Known RBP	12.13	□□□□□ -0.47
TCF4-238	ENST00000568169	E2F8	A0AVK6	867 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	FRMD3	A2A2Y4	597 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169		H0Y626	953 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	KIAA0391	O15091	583 aa	Known RBP	12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	AP5Z1	O43299	807 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	TRIM16	O95361	564 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	ABL1	P00519	1130 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	TNNC2	P02585	160 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	NEFL	P07196	543 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	FAM163B	P0C2L3	166 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	MBL2	P11226	248 aa	Predicted RBP	12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	GABRG2	P18507	467 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	RDX	P35241	583 aa	Known RBP	12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	ATXN3	P54252	364 aa	Predicted RBP	12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	FAM193A	P78312	1265 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	GAD2	Q05329	585 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	GFPT1	Q06210	699 aa	Predicted RBP	12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	RABEP1	Q15276	862 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	SURF1	Q15526	300 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	DUOXA2	Q1HG44	320 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	MDH1B	Q5I0G3	518 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	TDRD10	Q5VZ19	366 aa	Known RBP	12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	RRAGB	Q5VZM2	374 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	LARP1B	Q659C4	914 aa	Known RBP	12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	SLC36A4	Q6YBV0	504 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	SV2B	Q7L1I2	683 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	CHCHD4	Q8N4Q1	142 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	NOC3L	Q8WTT2	800 aa	Known RBP	12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	OTUB2	Q96DC9	234 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	ZFR	Q96KR1	1074 aa	Known RBP	12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	SLITRK1	Q96PX8	696 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	MRPL45	Q9BRJ2	306 aa	Known RBP	12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	FSCN3	Q9NQT6	498 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	HCN2	Q9UL51	889 aa		12.12	□□□□□ -0.47
TCF4-238	ENST00000568169	TBC1D3B	A6NDS4	549 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	ZNF233	A6NK53	670 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	HOXC11	O43248	304 aa	Predicted RBP	12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	OPHN1	O60890	802 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	TULP3	O75386	442 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	TACC1	O75410	805 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	PRPF6	O94906	941 aa	Known RBP	12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	CD59	P13987	128 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	IDE	P14735	1019 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	GNL1	P36915	607 aa	Predicted RBP	12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	CACNA2D1	P54289	1103 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	RPL6	Q02878	288 aa	Known RBP	12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	ZNF33A	Q06730	810 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	HNRNPD	Q14103	355 aa	Known RBP	12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	ZNF423	Q2M1K9	1284 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	HS2ST1	Q7LGA3	356 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	RABEPK	Q7Z6M1	372 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	RAB44	Q7Z6P3	723 aa	Predicted RBP	12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	CBWD2	Q8IUF1	395 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	MINDY1	Q8N5J2	469 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	DEFB119	Q8N690	84 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	ZNF513	Q8N8E2	541 aa	Predicted RBP	12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	MMS19	Q96T76	1030 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	DUSP9	Q99956	384 aa	Known RBP	12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	GTPBP2	Q9BX10	602 aa	Known RBP	12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	ZNF518B	Q9C0D4	1074 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	ELOVL4	Q9GZR5	314 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	PANK4	Q9NVE7	773 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	DNAAF2	Q9NVR5	837 aa	Known RBP	12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	CALCOCO1	Q9P1Z2	691 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	FBXO2	Q9UK22	296 aa	Predicted RBP	12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	SMC3	Q9UQE7	1217 aa		12.11	□□□□□ -0.47
TCF4-238	ENST00000568169	IGHV1OR15-9	A0A0B4J2B8	117 aa		12.1	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms