RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 LIMK1P53667 647 aa19.86■□□□□ 0.77
CLN3-218ENST00000565688 ELF2Q15723 593 aa19.86■□□□□ 0.77
CLN3-218ENST00000565688 GAB4Q2WGN9 574 aa19.86■□□□□ 0.77
CLN3-218ENST00000565688 ZACNQ401N2 412 aa19.86■□□□□ 0.77
CLN3-218ENST00000565688 PLK5Q496M5 336 aa19.86■□□□□ 0.77
CLN3-218ENST00000565688 AASDHQ4L235 1098 aaPredicted RBP19.86■□□□□ 0.77
CLN3-218ENST00000565688 HECTD3Q5T447 861 aa19.86■□□□□ 0.77
CLN3-218ENST00000565688 UNC93AQ86WB7 457 aa19.86■□□□□ 0.77
CLN3-218ENST00000565688 TSTD1Q8NFU3 115 aa19.86■□□□□ 0.77
CLN3-218ENST00000565688 OTUB2Q96DC9 234 aa19.86■□□□□ 0.77
CLN3-218ENST00000565688 HPSEQ9Y251 543 aa19.86■□□□□ 0.77
CLN3-218ENST00000565688 TNFRSF10BO14763 440 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 MAPK13O15264 365 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 COCHO43405 550 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 GDF9O60383 454 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 AP1G2O75843 785 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 RHOBTB1O94844 696 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 SLC5A3P53794 718 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 DLG4P78352 724 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 KRT85P78386 507 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 MRPS21P82921 87 aaKnown RBP19.85■□□□□ 0.77
CLN3-218ENST00000565688 C2orf27AQ580R0 203 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 PAQR9Q6ZVX9 377 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 ACOT1Q86TX2 421 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 C11orf74Q86VG3 221 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 FUKQ8N0W3 1084 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 CRYBG2Q8N1P7 616 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 SCAMP5Q8TAC9 235 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 PNKPQ96T60 521 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 DUSP9Q99956 384 aaKnown RBP19.85■□□□□ 0.77
CLN3-218ENST00000565688 SDCBP2Q9H190 292 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 KRT82Q9NSB4 513 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 CHORDC1Q9UHD1 332 aaPredicted RBP19.85■□□□□ 0.77
CLN3-218ENST00000565688 MMP17Q9ULZ9 603 aa19.85■□□□□ 0.77
CLN3-218ENST00000565688 KIAA1549LQ6ZVL6 1849 aa19.84■□□□□ 0.77
CLN3-218ENST00000565688 FAM92AA1XBS5 289 aa19.84■□□□□ 0.77
CLN3-218ENST00000565688 PALM2-AKAP2B1ALY0 433 aaPredicted RBP19.84■□□□□ 0.77
CLN3-218ENST00000565688 ASS1P00966 412 aaKnown RBP19.84■□□□□ 0.77
CLN3-218ENST00000565688 SYKP43405 635 aa19.84■□□□□ 0.77
CLN3-218ENST00000565688 DGKEP52429 567 aa19.84■□□□□ 0.77
CLN3-218ENST00000565688 SEC13P55735 322 aa19.84■□□□□ 0.77
CLN3-218ENST00000565688 SF3A2Q15428 464 aaKnown RBP19.84■□□□□ 0.77
CLN3-218ENST00000565688 HSF5Q4G112 596 aaPredicted RBP19.84■□□□□ 0.77
CLN3-218ENST00000565688 USP39Q53GS9 565 aaKnown RBP19.84■□□□□ 0.77
CLN3-218ENST00000565688 PLA2G2CQ5R387 149 aa19.84■□□□□ 0.77
CLN3-218ENST00000565688 CEP135Q66GS9 1140 aa19.84■□□□□ 0.77
CLN3-218ENST00000565688 RHBDF2Q6PJF5 856 aa19.84■□□□□ 0.77
CLN3-218ENST00000565688 SV2AQ7L0J3 742 aa19.84■□□□□ 0.77
CLN3-218ENST00000565688 IMPG2Q9BZV3 1241 aa19.84■□□□□ 0.77
CLN3-218ENST00000565688 FBXO44Q9H4M3 255 aa19.84■□□□□ 0.77
CLN3-218ENST00000565688 VPS45Q9NRW7 570 aa19.84■□□□□ 0.77
CLN3-218ENST00000565688 TRAF3IP3Q9Y228 551 aa19.84■□□□□ 0.77
CLN3-218ENST00000565688 SDK1Q7Z5N4 2213 aa19.84■□□□□ 0.77
CLN3-218ENST00000565688 APODP05090 189 aa19.83■□□□□ 0.77
CLN3-218ENST00000565688 ZDHHC11BP0C7U3 371 aa19.83■□□□□ 0.77
CLN3-218ENST00000565688 ADH5P11766 374 aa19.83■□□□□ 0.77
CLN3-218ENST00000565688 MPLP40238 635 aa19.83■□□□□ 0.77
CLN3-218ENST00000565688 PIK3CAP42336 1068 aa19.83■□□□□ 0.77
CLN3-218ENST00000565688 NDST1P52848 882 aa19.83■□□□□ 0.77
CLN3-218ENST00000565688 NFIL3Q16649 462 aa19.83■□□□□ 0.77
CLN3-218ENST00000565688 PPM1JQ5JR12 505 aa19.83■□□□□ 0.77
CLN3-218ENST00000565688 IL31Q6EBC2 164 aa19.83■□□□□ 0.77
CLN3-218ENST00000565688 SLC2A14Q8TDB8 520 aa19.83■□□□□ 0.77
CLN3-218ENST00000565688 ZFRQ96KR1 1074 aaKnown RBP19.83■□□□□ 0.77
CLN3-218ENST00000565688 DUSP15Q9H1R2 295 aaPredicted RBP19.83■□□□□ 0.77
CLN3-218ENST00000565688 CSNK1G1Q9HCP0 422 aa19.83■□□□□ 0.77
CLN3-218ENST00000565688 SH3BP1Q9Y3L3 701 aa19.83■□□□□ 0.77
CLN3-218ENST00000565688 MYO16Q9Y6X6 1858 aa19.83■□□□□ 0.76
CLN3-218ENST00000565688 A0A0A0MRY4 1105 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 FAM237AA0A1B0GTK4 181 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 SCAMP3O14828 347 aaKnown RBP19.82■□□□□ 0.76
CLN3-218ENST00000565688 ALDH1A2O94788 518 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 RHOBTB3O94955 611 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 KAT7O95251 611 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 CCDC130P13994 396 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 GRIA2P42262 883 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 VAMP7P51809 220 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 ENPEPQ07075 957 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 CCDC6Q16204 474 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 CRY1Q16526 586 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 PREPLQ4J6C6 727 aaPredicted RBP19.82■□□□□ 0.76
CLN3-218ENST00000565688 INTS8Q75QN2 995 aaKnown RBP19.82■□□□□ 0.76
CLN3-218ENST00000565688 RASSF3Q86WH2 238 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 ELMO3Q96BJ8 720 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 CNOT6LQ96LI5 555 aaKnown RBP19.82■□□□□ 0.76
CLN3-218ENST00000565688 SMOQ99835 787 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 DNAI2Q9GZS0 605 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 NACA2Q9H009 215 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 CCSER2Q9H7U1 834 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 ARHGEF4Q9NR80 690 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 GMIPQ9P107 970 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 ATP6V1DQ9Y5K8 247 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 LAMA1P25391 3075 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 EML5Q05BV3 1969 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 EPG5Q9HCE0 2579 aa19.82■□□□□ 0.76
CLN3-218ENST00000565688 ACACBO00763 2458 aa19.81■□□□□ 0.76
CLN3-218ENST00000565688 HLA-DRAP01903 254 aa19.81■□□□□ 0.76
CLN3-218ENST00000565688 ADRB1P08588 477 aa19.81■□□□□ 0.76
CLN3-218ENST00000565688 FAM200BP0CF97 657 aa19.81■□□□□ 0.76
CLN3-218ENST00000565688 NR2F2P24468 414 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms