RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 LRRC38Q5VT99 294 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 CES5AQ6NT32 575 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 LLGL2Q6P1M3 1020 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 CC2D1AQ6P1N0 951 aaPredicted RBP9.39□□□□□ -0.91
VPS39-207ENST00000563692 FBXO38Q6PIJ6 1188 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 DCLRE1AQ6PJP8 1040 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 TMEM130Q8N3G9 435 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 C12orf29Q8N999 325 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 GSTCDQ8NEC7 633 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 FNIP1Q8TF40 1166 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 CD101Q93033 1021 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 MSLNLQ96KJ4 702 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 SENP8Q96LD8 212 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 KRT12Q99456 494 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 NCAPGQ9BPX3 1015 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 LRRC1Q9BTT6 524 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 EMILIN2Q9BXX0 1053 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 EPC1Q9H2F5 836 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 SLITRK6Q9H5Y7 841 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 GOLGA2P5Q9HBQ8 144 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 CYLDQ9NQC7 956 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 ST7Q9NRC1 585 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 HOMER3Q9NSC5 361 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 RBM12Q9NTZ6 932 aaKnown RBP9.39□□□□□ -0.91
VPS39-207ENST00000563692 MIOSQ9NXC5 875 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 CLEC1BQ9P126 229 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 TMEM59LQ9UK28 342 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 DSEQ9UL01 958 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 L1RE1Q9UN81 338 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 USTQ9Y2C2 406 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 USP15Q9Y4E8 981 aaPredicted RBP9.39□□□□□ -0.91
VPS39-207ENST00000563692 FNDC1Q4ZHG4 1894 aaPredicted RBP9.38□□□□□ -0.91
VPS39-207ENST00000563692 TCRBV5S1A1TA0A578 114 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 C2orf71A6NGG8 1288 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 HIDE1A8MVS5 230 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 PI4K2BG5E9Z4 385 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 GOLGA8SH3BPF8 625 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 INPPL1O15357 1258 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 DCXO43602 365 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 RNF8O76064 485 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 ZRANB2O95218 330 aaKnown RBP eCLIP9.38□□□□□ -0.91
VPS39-207ENST00000563692 GLP2RO95838 553 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 URODP06132 367 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 PYGMP11217 842 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 ODC1P11926 461 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 PTPN1P18031 435 aaKnown RBP9.38□□□□□ -0.91
VPS39-207ENST00000563692 PSMA2P25787 234 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 OR1G1P47890 313 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 SLC11A1P49279 550 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 BST2Q10589 180 aaKnown RBP9.38□□□□□ -0.91
VPS39-207ENST00000563692 UPP1Q16831 310 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 PTPN20Q4JDL3 420 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 PPP1R15BQ5SWA1 713 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 ZFYVE27Q5T4F4 411 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 CYP4A22Q5TCH4 519 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 OR6B2Q6IFH4 312 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 ANKRD54Q6NXT1 300 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 ELMSAN1Q6PJG2 1045 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 TMEM184AQ6ZMB5 413 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 CCNI2Q6ZMN8 369 aaPredicted RBP9.38□□□□□ -0.91
VPS39-207ENST00000563692 TMEM110Q86TL2 294 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 XYLT1Q86Y38 959 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 ZNF280BQ86YH2 543 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 KLHL7Q8IXQ5 586 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 RCOR2Q8IZ40 523 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 THEM5Q8N1Q8 247 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 NIPA2Q8N8Q9 360 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 KBTBD7Q8WVZ9 684 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 KRT35Q92764 455 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 MCRS1Q96EZ8 462 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 HSFY1Q96LI6 401 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 MCEEQ96PE7 176 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 CPXM1Q96SM3 734 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 HNRNPABQ99729 332 aaKnown RBP9.38□□□□□ -0.91
VPS39-207ENST00000563692 COLEC11Q9BWP8 271 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 AP1M1Q9BXS5 423 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 SLC4A5Q9BY07 1137 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 ZBP1Q9H171 429 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 EPHX3Q9H6B9 360 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 MRPL17Q9NRX2 175 aaKnown RBP9.38□□□□□ -0.91
VPS39-207ENST00000563692 DZANK1Q9NVP4 752 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 ASNSD1Q9NWL6 643 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 DDX56Q9NY93 547 aaKnown RBP9.38□□□□□ -0.91
VPS39-207ENST00000563692 SMARCAL1Q9NZC9 954 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 EHD2Q9NZN4 543 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 STIM2Q9P246 746 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 DNAJB4Q9UDY4 337 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 FEZ2Q9UHY8 353 aaPredicted RBP9.38□□□□□ -0.91
VPS39-207ENST00000563692 CDH9Q9ULB4 789 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 SSX2IPQ9Y2D8 614 aa9.38□□□□□ -0.91
VPS39-207ENST00000563692 PRG3Q9Y2Y8 225 aaPredicted RBP9.38□□□□□ -0.91
VPS39-207ENST00000563692 CASTOR2A6NHX0 329 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 C19orf67A6NJJ6 358 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 GABRDO14764 452 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 SART1O43290 800 aaKnown RBP9.37□□□□□ -0.91
VPS39-207ENST00000563692 TRAPPC3O43617 180 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 CLASP2O75122 1294 aaKnown RBP9.37□□□□□ -0.91
VPS39-207ENST00000563692 B3GAT3O94766 335 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 DDHD2O94830 711 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 ERBB2P04626 1255 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms