RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 KLHL30Q0D2K2 578 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 COASYQ13057 564 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 MPP3Q13368 585 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 TNIP1Q15025 636 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 NFKBIBQ15653 356 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 GPR68Q15743 365 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 CPSF6Q16630 551 aaKnown RBP eCLIP5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 SGO2Q562F6 1265 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 TMTC4Q5T4D3 741 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 XP32Q5T750 250 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 IRGCQ6NXR0 463 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 TAF2Q6P1X5 1199 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 WDR73Q6P4I2 378 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 BTNL9Q6UXG8 535 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 ATF7IPQ6VMQ6 1270 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 IKBIPQ70UQ0 350 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 DYMQ7RTS9 669 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 GATAD2AQ86YP4 633 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 TMEM57Q8N5G2 664 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 LZTR1Q8N653 840 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 TMCO5AQ8N6Q1 288 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 VGLL2Q8N8G2 317 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 PIP4K2CQ8TBX8 421 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 ZNF606Q8WXB4 792 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 VPS33AQ96AX1 596 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 UROC1Q96N76 676 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 RUNDC3BQ96NL0 473 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 TRAPPC9Q96Q05 1148 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 TUBGCP5Q96RT8 1024 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 METTL22Q9BUU2 404 aaPredicted RBP5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 EIF2AQ9BY44 585 aaKnown RBP5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 TRIM54Q9BYV2 358 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 MAGEB5Q9BZ81 275 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 TRIM5Q9C035 493 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 ATXN3LQ9H3M9 355 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 ERVK-5Q9HDB9 667 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 SARS2Q9NP81 518 aaKnown RBP5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 FANCFQ9NPI8 374 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 MCM9Q9NXL9 1143 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 TBC1D14Q9P2M4 693 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 MOSPD1Q9UJG1 213 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 USP18Q9UMW8 372 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 MTO1Q9Y2Z2 717 aaKnown RBP5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 EPN1Q9Y6I3 576 aaPredicted RBP5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 FAM169AQ9Y6X4 670 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 SYNGAP1Q96PV0 1343 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 USP54Q70EL1 1684 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 KDRP35968 1356 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 MARF1Q9Y4F3 1742 aaKnown RBP5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 NCAPD2Q15021 1401 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 C7orf72A4D263 438 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 FAM90A27PA6NNH2 459 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 HYAL3O43820 417 aaPredicted RBP5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 PCDH8O95206 1070 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 AHSGP02765 367 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 CLEC3BP05452 202 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 HMOX1P09601 288 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 HSPA1AP0DMV8 641 aaKnown RBP5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 HSPA1BP0DMV9 641 aaKnown RBP5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 VAV1P15498 845 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 THPOP40225 353 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 ETV3P41162 512 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 FNTBP49356 437 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 CARSP49589 748 aaKnown RBP5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 RAD23AP54725 363 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 RPL11P62913 178 aaKnown RBP5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 PPARAQ07869 468 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 EPS8Q12929 822 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 SLC14A1Q13336 389 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 SMAD4Q13485 552 aaKnown RBP5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 DCTN2Q13561 401 aaKnown RBP5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 LAPTM5Q13571 262 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 SF3B3Q15393 1217 aaKnown RBP5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 BAK1Q16611 211 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 MAN2A1Q16706 1144 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 SHROOM1Q2M3G4 852 aaPredicted RBP5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 RTP2Q5QGT7 225 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 PRAMEF14Q5SWL7 426 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 FAM69AQ5T7M9 428 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 ATPAF1Q5TC12 328 aaPredicted RBP5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 KLHL24Q6TFL4 600 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 USP51Q70EK9 711 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 CEP68Q76N32 757 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 ZER1Q7Z7L7 766 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 WDR63Q8IWG1 891 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 THNSL1Q8IYQ7 743 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 GLB1L3Q8NCI6 653 aaPredicted RBP5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 AGBL5Q8NDL9 886 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 OR6Y1Q8NGX8 325 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 OR14C36Q8NHC7 312 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 SPATA18Q8TC71 538 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 CPT1CQ8TCG5 803 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 SEPT1Q8WYJ6 367 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 NCSTNQ92542 709 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 EXOC4Q96A65 974 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 FOXRED1Q96CU9 486 aaPredicted RBP5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 APOPT1Q96IL0 206 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 CCDC43Q96MW1 224 aaKnown RBP5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms