RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 ATF2P15336 505 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 DAOAP59103 153 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 RNASE9P60153 205 aaKnown RBP12.79□□□□□ -0.36
HERC1-205ENST00000559886 AMPD2Q01433 879 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 PIGHQ14442 188 aaPredicted RBP12.79□□□□□ -0.36
HERC1-205ENST00000559886 DDR2Q16832 855 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 TRNP1Q6NT89 227 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 TMC7Q7Z402 723 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 HES6Q96HZ4 224 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 C11orf84Q9BUA3 381 aaPredicted RBP12.79□□□□□ -0.36
HERC1-205ENST00000559886 ASNSD1Q9NWL6 643 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 PACSIN2Q9UNF0 486 aaPredicted RBP12.79□□□□□ -0.36
HERC1-205ENST00000559886 YBX2Q9Y2T7 364 aaKnown RBP12.79□□□□□ -0.36
HERC1-205ENST00000559886 IRAK3Q9Y616 596 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 CHD9Q3L8U1 2897 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.79□□□□□ -0.36
HERC1-205ENST00000559886 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.79□□□□□ -0.36
HERC1-205ENST00000559886 TEX28O15482 410 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 SART1O43290 800 aaKnown RBP12.79□□□□□ -0.36
HERC1-205ENST00000559886 HSF2BPO75031 334 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 GRAP2O75791 330 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 CXCL14O95715 111 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 GLI1P08151 1106 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 FLT3P36888 993 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 GPR15P49685 360 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 SLC5A3P53794 718 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 ERVFC1P60507 584 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 RPS6KA1Q15418 735 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 PTPROQ16827 1216 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 MGAT5BQ3V5L5 792 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 CPNE8Q86YQ8 564 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 SCAMP5Q8TAC9 235 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.79□□□□□ -0.36
HERC1-205ENST00000559886 NDRG1Q92597 394 aaKnown RBP12.79□□□□□ -0.36
HERC1-205ENST00000559886 CD101Q93033 1021 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 SPATA17Q96L03 361 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 TGS1Q96RS0 853 aaKnown RBP12.79□□□□□ -0.36
HERC1-205ENST00000559886 SNX12Q9UMY4 172 aa12.79□□□□□ -0.36
HERC1-205ENST00000559886 LAMA3Q16787 3333 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 URI1O94763 535 aaPredicted RBP12.78□□□□□ -0.36
HERC1-205ENST00000559886 CNPP09543 421 aaKnown RBP12.78□□□□□ -0.36
HERC1-205ENST00000559886 USP17L7P0C7H9 530 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 PDGFRAP16234 1089 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 PRLRP16471 622 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 GPD1P21695 349 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 DNAJB1P25685 340 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 BMP8BP34820 402 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 PBX2P40425 430 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 TUFMP49411 452 aaKnown RBP12.78□□□□□ -0.36
HERC1-205ENST00000559886 ZNF143P52747 638 aaPredicted RBP12.78□□□□□ -0.36
HERC1-205ENST00000559886 ERVK-21P61565 698 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 RPL10AP62906 217 aaKnown RBP12.78□□□□□ -0.36
HERC1-205ENST00000559886 YWHAZP63104 245 aaKnown RBP12.78□□□□□ -0.36
HERC1-205ENST00000559886 BHLHA9Q7RTU4 235 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 NUP93Q8N1F7 819 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 POF1BQ8WVV4 589 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 RXFP2Q8WXD0 754 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 IRGQQ8WZA9 623 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 CEP295NLQ96MC4 621 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 SEPT5Q99719 369 aaPredicted RBP12.78□□□□□ -0.36
HERC1-205ENST00000559886 TCF25Q9BQ70 676 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 CNPY3Q9BT09 278 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 IL37Q9NZH6 218 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 MTUS1Q9ULD2 1270 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 MAFFQ9ULX9 164 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 MTCL1Q9Y4B5 1905 aaKnown RBP12.78□□□□□ -0.36
HERC1-205ENST00000559886 PDE4DIPQ5VU43 2346 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 MIF4GDA9UHW6 222 aaKnown RBP12.78□□□□□ -0.36
HERC1-205ENST00000559886 SPOPO43791 374 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 SOAT2O75908 522 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 PSMA2P25787 234 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 ACAP1Q15027 740 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 SDHAF4Q5VUM1 108 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 PBX4Q9BYU1 374 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 TLR9Q9NR96 1032 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 SAR1BQ9Y6B6 198 aa12.78□□□□□ -0.36
HERC1-205ENST00000559886 COL4A4P53420 1690 aaPredicted RBP12.78□□□□□ -0.36
HERC1-205ENST00000559886 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.77□□□□□ -0.37
HERC1-205ENST00000559886 YJEFN3A6XGL0 299 aa12.77□□□□□ -0.37
HERC1-205ENST00000559886 E7ENQ6 273 aa12.77□□□□□ -0.37
HERC1-205ENST00000559886 DPYSL4O14531 572 aa12.77□□□□□ -0.37
HERC1-205ENST00000559886 SEC24AO95486 1093 aa12.77□□□□□ -0.37
HERC1-205ENST00000559886 MRPL43Q8N983 215 aaKnown RBP12.77□□□□□ -0.37
HERC1-205ENST00000559886 FAM149B1Q96BN6 582 aa12.77□□□□□ -0.37
HERC1-205ENST00000559886 DDX23Q9BUQ8 820 aaKnown RBP12.77□□□□□ -0.37
HERC1-205ENST00000559886 ENTPD7Q9NQZ7 604 aa12.77□□□□□ -0.37
HERC1-205ENST00000559886 MYO7AQ13402 2215 aa12.77□□□□□ -0.37
HERC1-205ENST00000559886 GRM6O15303 877 aa12.77□□□□□ -0.37
HERC1-205ENST00000559886 DDX3YO15523 660 aaKnown RBP12.77□□□□□ -0.37
HERC1-205ENST00000559886 DAB1O75553 588 aa12.77□□□□□ -0.37
HERC1-205ENST00000559886 TCP1P17987 556 aaKnown RBP12.77□□□□□ -0.37
HERC1-205ENST00000559886 ATF6P18850 670 aa12.77□□□□□ -0.37
HERC1-205ENST00000559886 MATKP42679 507 aa12.77□□□□□ -0.37
HERC1-205ENST00000559886 PTPN9P43378 593 aa12.77□□□□□ -0.37
HERC1-205ENST00000559886 TUBB2AQ13885 445 aa12.77□□□□□ -0.37
HERC1-205ENST00000559886 CAMK1Q14012 370 aa12.77□□□□□ -0.37
HERC1-205ENST00000559886 SMC1AQ14683 1233 aaKnown RBP12.77□□□□□ -0.37
HERC1-205ENST00000559886 CCDC14Q49A88 953 aa12.77□□□□□ -0.37
HERC1-205ENST00000559886 DAB2IPQ5VWQ8 1189 aa12.77□□□□□ -0.37
HERC1-205ENST00000559886 DENND5BQ6ZUT9 1274 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms