RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 GALNT15Q8N3T1 639 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 SDR16C5Q8N3Y7 309 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 SIMC1Q8NDZ2 872 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 SCAMP5Q8TAC9 235 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 POC1BQ8TC44 478 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 IPCEF1Q8WWN9 437 aaPredicted RBP1.92□□□□□ -2.1
USP3-209ENST00000558925 ASB12Q8WXK4 309 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 TRIM63Q969Q1 353 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 PPP2R3CQ969Q6 453 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 MIEF2Q96C03 454 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 MCRS1Q96EZ8 462 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 SNX27Q96L92 541 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 PNKPQ96T60 521 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 MNTQ99583 582 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 PAGR1Q9BTK6 254 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 GPR87Q9BY21 358 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 SLC25A32Q9H2D1 315 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 RIOX1Q9H6W3 641 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 GBA2Q9HCG7 927 aaPredicted RBP1.92□□□□□ -2.1
USP3-209ENST00000558925 XPNPEP3Q9NQH7 507 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 NECTIN3Q9NQS3 549 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 TRPM5Q9NZQ8 1165 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 EIF2B4Q9UI10 523 aaKnown RBP1.92□□□□□ -2.1
USP3-209ENST00000558925 VPS51Q9UID3 782 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 SERTAD3Q9UJW9 196 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 FEM1BQ9UK73 627 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 NDRG4Q9ULP0 352 aaKnown RBP1.92□□□□□ -2.1
USP3-209ENST00000558925 CAPN11Q9UMQ6 739 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 SSX2IPQ9Y2D8 614 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 MTO1Q9Y2Z2 717 aaKnown RBP1.92□□□□□ -2.1
USP3-209ENST00000558925 CHST2Q9Y4C5 530 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 SNX14Q9Y5W7 946 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 LRRFIP2Q9Y608 721 aaKnown RBP1.92□□□□□ -2.1
USP3-209ENST00000558925 RAD54BQ9Y620 910 aa1.92□□□□□ -2.1
USP3-209ENST00000558925 FAM90A18PA6NE21 464 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 FAM90A16PA6NEW6 464 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 TMEM191CA6NGB0 347 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 HMX3A6NHT5 357 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 FAM90A9PA6NNJ1 464 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 FAM90A5PA8MXJ8 464 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 H0Y3Z8 333 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 CD3EAPO15446 510 aaKnown RBP1.91□□□□□ -2.1
USP3-209ENST00000558925 CCP110O43303 1012 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 DHHO43323 396 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 FAM20BO75063 409 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 PPP6R2O75170 966 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 ERN1O75460 977 aaKnown RBP1.91□□□□□ -2.1
USP3-209ENST00000558925 NCR1O76036 304 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 RECQL4O94761 1208 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 ACTL6BO94805 426 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 SCAF4O95104 1147 aaKnown RBP1.91□□□□□ -2.1
USP3-209ENST00000558925 GPANK1O95872 356 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 FAM90A15PP0C7V4 464 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 FAM90A14PP0C7W9 464 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 SRGAP2BP0DMP2 458 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 PEPDP12955 493 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 HSD3B1P14060 373 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 KCNA2P16389 499 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 TNFAIP3P21580 790 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 MGAT1P26572 445 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 HTR7P34969 479 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 NPTX2P47972 431 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 NDUFV1P49821 464 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 TUBP50607 506 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 HNRNPMP52272 730 aaKnown RBP eCLIP1.91□□□□□ -2.1
USP3-209ENST00000558925 DGKEP52429 567 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 MXRA7P84157 204 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 GPS1Q13098 491 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 CUL4BQ13620 913 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 RRP1BQ14684 758 aaKnown RBP1.91□□□□□ -2.1
USP3-209ENST00000558925 INSCQ1MX18 579 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 MGAT5BQ3V5L5 792 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 PREPLQ4J6C6 727 aaPredicted RBP1.91□□□□□ -2.1
USP3-209ENST00000558925 RBM20Q5T481 1227 aaKnown RBP1.91□□□□□ -2.1
USP3-209ENST00000558925 DEPDC1Q5TB30 811 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 JAKMIP3Q5VZ66 844 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 B3GNTL1Q67FW5 361 aaPredicted RBP1.91□□□□□ -2.1
USP3-209ENST00000558925 ABLIM2Q6H8Q1 611 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 TANGO2Q6ICL3 276 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 MRNIPQ6NTE8 343 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 KLHL17Q6TDP4 642 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 LAYNQ6UX15 382 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 DPY19L3Q6ZPD9 716 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 RFX8Q6ZV50 586 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 GDF7Q7Z4P5 450 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 LRRTM4Q86VH4 590 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 GATAD2AQ86YP4 633 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 TMTC1Q8IUR5 882 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 ANKRD18AQ8IVF6 992 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 CPOQ8IVL8 374 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 MAPKAPK5Q8IW41 473 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 FTSJ3Q8IY81 847 aaKnown RBP1.91□□□□□ -2.1
USP3-209ENST00000558925 METTL25Q8N6Q8 603 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 C9orf106Q8NAJ2 232 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 CSGALNACT1Q8TDX6 532 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 OTUD7AQ8TE49 926 aaPredicted RBP1.91□□□□□ -2.1
USP3-209ENST00000558925 ZNF384Q8TF68 577 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 AFG1LQ8WV93 481 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 ATG4AQ8WYN0 398 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 RUBCNQ92622 972 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 282.3 ms