RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ASNSD1Q9NWL6 643 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 IL1RAPL1Q9NZN1 696 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 SAE1Q9UBE0 346 aaPredicted RBP16.96■□□□□ 0.3
SHMT2-231ENST00000557433 SSC5DA1L4H1 1573 aa16.95■□□□□ 0.3
SHMT2-231ENST00000557433 ANKRD33BA6NCL7 494 aa16.95■□□□□ 0.3
SHMT2-231ENST00000557433 TOM1L1O75674 476 aa16.95■□□□□ 0.3
SHMT2-231ENST00000557433 KRT38O76015 456 aa16.95■□□□□ 0.3
SHMT2-231ENST00000557433 RGS20O76081 388 aa16.95■□□□□ 0.3
SHMT2-231ENST00000557433 ENDOD1O94919 500 aa16.95■□□□□ 0.3
SHMT2-231ENST00000557433 CST3P01034 146 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-231ENST00000557433 MYCNP04198 464 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-231ENST00000557433 MAGEA6P43360 314 aa16.95■□□□□ 0.3
SHMT2-231ENST00000557433 CACNA2D1P54289 1103 aa16.95■□□□□ 0.3
SHMT2-231ENST00000557433 MYL6P60660 151 aa16.95■□□□□ 0.3
SHMT2-231ENST00000557433 ACTR3P61158 418 aa16.95■□□□□ 0.3
SHMT2-231ENST00000557433 PSMC1P62191 440 aaKnown RBP16.95■□□□□ 0.3
SHMT2-231ENST00000557433 CYP4A22Q5TCH4 519 aa16.95■□□□□ 0.3
SHMT2-231ENST00000557433 ARCQ7LC44 396 aa16.95■□□□□ 0.3
SHMT2-231ENST00000557433 MYLK4Q86YV6 388 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-231ENST00000557433 CRLF3Q8IUI8 442 aa16.95■□□□□ 0.3
SHMT2-231ENST00000557433 TFAP2BQ92481 460 aa16.95■□□□□ 0.3
SHMT2-231ENST00000557433 RTP4Q96DX8 246 aa16.95■□□□□ 0.3
SHMT2-231ENST00000557433 ALG13Q9NP73 1137 aaKnown RBP16.95■□□□□ 0.3
SHMT2-231ENST00000557433 ZNF219Q9P2Y4 722 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-231ENST00000557433 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.95■□□□□ 0.3
SHMT2-231ENST00000557433 C2CD2Q9Y426 696 aa16.95■□□□□ 0.3
SHMT2-231ENST00000557433 FAM237BA0A1B0GVD1 139 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 EME2A4GXA9 379 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-231ENST00000557433 TRIM49D1C9J1S8 452 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 TRUB2O95900 331 aaKnown RBP16.94■□□□□ 0.3
SHMT2-231ENST00000557433 SERPINB9P50453 376 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 SH3BGRP55822 239 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-231ENST00000557433 CNTN2Q02246 1040 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 WASHC5Q12768 1159 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 THEMIS2Q5TEJ8 643 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 TMCO4Q5TGY1 634 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 MEX3CQ5U5Q3 659 aaKnown RBP16.94■□□□□ 0.3
SHMT2-231ENST00000557433 DARS2Q6PI48 645 aaKnown RBP16.94■□□□□ 0.3
SHMT2-231ENST00000557433 MTHFD1LQ6UB35 978 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 IGDCC3Q8IVU1 814 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 UCMAQ8WVF2 138 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 ZBTB10Q96DT7 871 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 ZBED3Q96IU2 234 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-231ENST00000557433 FAM161BQ96MY7 647 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 MRPL4Q9BYD3 311 aaKnown RBP16.94■□□□□ 0.3
SHMT2-231ENST00000557433 FAM96AQ9H5X1 160 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 RPAP3Q9H6T3 665 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-231ENST00000557433 KRT82Q9NSB4 513 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 PLA2G4CQ9UP65 541 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 OGTO15294 1046 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 SERPINA6P08185 405 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 ICAM3P32942 547 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 TMPRSS15P98073 1019 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 SMTNL2Q2TAL5 461 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 ZNF699Q32M78 642 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 STXBP5Q5T5C0 1151 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 DENND1BQ6P3S1 775 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 JOSD2Q8TAC2 188 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 FAF2Q96CS3 445 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 MIS12Q9H081 205 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 VPS33BQ9H267 617 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 C12orf65Q9H3J6 166 aaKnown RBP16.94■□□□□ 0.3
SHMT2-231ENST00000557433 NDE1Q9NXR1 346 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 TTLL3Q9Y4R7 772 aa16.94■□□□□ 0.3
SHMT2-231ENST00000557433 FAM189A1O60320 539 aa16.93■□□□□ 0.3
SHMT2-231ENST00000557433 C1QAP02745 245 aa16.93■□□□□ 0.3
SHMT2-231ENST00000557433 ANPEPP15144 967 aa16.93■□□□□ 0.3
SHMT2-231ENST00000557433 CNTFP26441 200 aa16.93■□□□□ 0.3
SHMT2-231ENST00000557433 CRABP2P29373 138 aa16.93■□□□□ 0.3
SHMT2-231ENST00000557433 ASPAP45381 313 aa16.93■□□□□ 0.3
SHMT2-231ENST00000557433 GABRB2P47870 512 aa16.93■□□□□ 0.3
SHMT2-231ENST00000557433 DSG1Q02413 1049 aa16.93■□□□□ 0.3
SHMT2-231ENST00000557433 BST1Q10588 318 aa16.93■□□□□ 0.3
SHMT2-231ENST00000557433 DYNC1I2Q13409 638 aaKnown RBP16.93■□□□□ 0.3
SHMT2-231ENST00000557433 XYLT1Q86Y38 959 aa16.93■□□□□ 0.3
SHMT2-231ENST00000557433 MCUQ8NE86 351 aa16.93■□□□□ 0.3
SHMT2-231ENST00000557433 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.93■□□□□ 0.34e-7■■□□□ 12.9
SHMT2-231ENST00000557433 PRR11Q96HE9 360 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-231ENST00000557433 FGD4Q96M96 766 aa16.93■□□□□ 0.3
SHMT2-231ENST00000557433 GBP5Q96PP8 586 aa16.93■□□□□ 0.3
SHMT2-231ENST00000557433 MTMR12Q9C0I1 747 aa16.93■□□□□ 0.3
SHMT2-231ENST00000557433 VCX3BQ9H321 246 aa16.93■□□□□ 0.3
SHMT2-231ENST00000557433 PPARGC1AQ9UBK2 798 aaKnown RBP16.93■□□□□ 0.3
SHMT2-231ENST00000557433 USP18Q9UMW8 372 aa16.93■□□□□ 0.3
SHMT2-231ENST00000557433 EIF4E1BA6NMX2 242 aaKnown RBP16.92■□□□□ 0.3
SHMT2-231ENST00000557433 H3BRJ5 948 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 SNNO75324 88 aaPredicted RBP16.92■□□□□ 0.3
SHMT2-231ENST00000557433 TNNC2P02585 160 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 MIPP30301 263 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 CRHR1P34998 444 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 RPL26P61254 145 aaKnown RBP16.92■□□□□ 0.3
SHMT2-231ENST00000557433 XIAPP98170 497 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 TEX44Q53QW1 395 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 KCNT1Q5JUK3 1230 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 ILDR2Q71H61 639 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 TTC7BQ86TV6 843 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 MAP7D3Q8IWC1 876 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 RTKN2Q8IZC4 609 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 RBM15BQ8NDT2 890 aaKnown RBP16.92■□□□□ 0.3
SHMT2-231ENST00000557433 DTX3LQ8TDB6 740 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms