RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 SCD5Q86SK9 330 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 TMEM110Q86TL2 294 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 SHKBP1Q8TBC3 707 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 PPP1R13BQ96KQ4 1090 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 HSFY1Q96LI6 401 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 MIS12Q9H081 205 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 POMKQ9H5K3 350 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 LRRC4Q9HBW1 653 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 WDR6Q9NNW5 1121 aaKnown RBP13.5□□□□□ -0.25
SHMT2-227ENST00000557269 ASAH2Q9NR71 780 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 OSER1Q9NX31 292 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 GMIPQ9P107 970 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 ADAMTS1Q9UHI8 967 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 COG5Q9UP83 839 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 SCML2Q9UQR0 700 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 BZW2Q9Y6E2 419 aaKnown RBP13.5□□□□□ -0.25
SHMT2-227ENST00000557269 A0A1W2PRU2 124 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 TMCO5BA8MYB1 307 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 RTN3O95197 1032 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-227ENST00000557269 ZBED1O96006 694 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 CEBPBP17676 345 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 FECHP22830 423 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 CYP4F8P98187 520 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 CDK17Q00537 523 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 CENPCQ03188 943 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 GFPT1Q06210 699 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-227ENST00000557269 PTP4A2Q12974 167 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 MAPK8IP2Q13387 824 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-227ENST00000557269 SMAD4Q13485 552 aaKnown RBP13.49□□□□□ -0.25
SHMT2-227ENST00000557269 TEAD2Q15562 447 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 TSR1Q2NL82 804 aaKnown RBP13.49□□□□□ -0.25
SHMT2-227ENST00000557269 STXBP5Q5T5C0 1151 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 PM20D1Q6GTS8 502 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 ACAD10Q6JQN1 1059 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 MMS22LQ6ZRQ5 1243 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 HFE2Q6ZVN8 426 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 PDZD4Q76G19 769 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-227ENST00000557269 CCDC186Q7Z3E2 898 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 PHLDB2Q86SQ0 1253 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 ERICH1Q86X53 443 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 TMEM139Q8IV31 216 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 ING5Q8WYH8 240 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 FBXO32Q969P5 355 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 PIWIL1Q96J94 861 aaKnown RBP13.49□□□□□ -0.25
SHMT2-227ENST00000557269 PANX2Q96RD6 677 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.49□□□□□ -0.25
SHMT2-227ENST00000557269 NHEJ1Q9H9Q4 299 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-227ENST00000557269 NMUR1Q9HB89 426 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 AVENQ9NQS1 362 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-227ENST00000557269 ZNHIT6Q9NWK9 470 aaKnown RBP13.49□□□□□ -0.25
SHMT2-227ENST00000557269 COMMD8Q9NX08 183 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 NENFQ9UMX5 172 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 CEP83Q9Y592 693 aa13.49□□□□□ -0.25
SHMT2-227ENST00000557269 BRWD1Q9NSI6 2320 aa13.48□□□□□ -0.25
SHMT2-227ENST00000557269 CLUHO75153 1309 aa13.48□□□□□ -0.25
SHMT2-227ENST00000557269 A0A1W2PQH9 124 aa13.48□□□□□ -0.25
SHMT2-227ENST00000557269 ZNF840PA6NDX5 716 aa13.48□□□□□ -0.25
SHMT2-227ENST00000557269 YJEFN3A6XGL0 299 aa13.48□□□□□ -0.25
SHMT2-227ENST00000557269 E7ENQ6 273 aa13.48□□□□□ -0.25
SHMT2-227ENST00000557269 ZDHHC11BP0C7U3 371 aa13.48□□□□□ -0.25
SHMT2-227ENST00000557269 MMP8P22894 467 aa13.48□□□□□ -0.25
SHMT2-227ENST00000557269 FSHRP23945 695 aa13.48□□□□□ -0.25
SHMT2-227ENST00000557269 DAOAP59103 153 aa13.48□□□□□ -0.25
SHMT2-227ENST00000557269 CBX2Q14781 532 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-227ENST00000557269 TAF5Q15542 800 aa13.48□□□□□ -0.25
SHMT2-227ENST00000557269 FAM183BPQ6ZVS7 135 aa13.48□□□□□ -0.25
SHMT2-227ENST00000557269 PHF13Q86YI8 300 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-227ENST00000557269 SIX6OS1Q8N1H7 587 aa13.48□□□□□ -0.25
SHMT2-227ENST00000557269 RIPOR3Q96MK2 946 aa13.48□□□□□ -0.25
SHMT2-227ENST00000557269 ZSWIM3Q96MP5 696 aa13.48□□□□□ -0.25
SHMT2-227ENST00000557269 C11orf70Q9BRQ4 267 aa13.48□□□□□ -0.25
SHMT2-227ENST00000557269 ATXN3LQ9H3M9 355 aa13.48□□□□□ -0.25
SHMT2-227ENST00000557269 FBXO44Q9H4M3 255 aa13.48□□□□□ -0.25
SHMT2-227ENST00000557269 MRPS23Q9Y3D9 190 aaKnown RBP13.48□□□□□ -0.25
SHMT2-227ENST00000557269 XIRP2A4UGR9 3374 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 SSU72P8A0A1W2PR75 194 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 C2orf78A6NCI8 922 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 ZNF263O14978 683 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 MTHFRP42898 656 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 ACADSBP45954 432 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 NSFP46459 744 aaKnown RBP13.47□□□□□ -0.25
SHMT2-227ENST00000557269 GABRB2P47870 512 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 KCNQ1P51787 676 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 MRPS5P82675 430 aaKnown RBP13.47□□□□□ -0.25
SHMT2-227ENST00000557269 MTF1Q14872 753 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 TXNDC8Q6A555 127 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 OLFML1Q6UWY5 402 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 MON1BQ7L1V2 547 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 GET4Q7L5D6 327 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-227ENST00000557269 XYLT1Q86Y38 959 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 SCML4Q8N228 414 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 KHSRPQ92945 711 aaKnown RBP eCLIP13.47□□□□□ -0.25
SHMT2-227ENST00000557269 PDLIM2Q96JY6 352 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 NOX5Q96PH1 765 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 SLITRK1Q96PX8 696 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 SLC22A12Q96S37 553 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 SLC46A2Q9BY10 475 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 SYNCQ9H7C4 482 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 CYLDQ9NQC7 956 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 CNGB3Q9NQW8 809 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms