RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 MCAMP43121 646 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 GLRBP48167 497 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 KLK7P49862 253 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 NT5C2P49902 561 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 GNAQP50148 359 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 CCNHP51946 323 aaPredicted RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 CCNG1P51959 295 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 ZNF131P52739 623 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 INHBCP55103 352 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 MAGOHP61326 146 aaKnown RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 MRPS25P82663 173 aaKnown RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 LACTBP83111 547 aaPredicted RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 LRRC63Q05C16 580 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 ZNF844Q08AG5 666 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 ZNF268Q14587 947 aaPredicted RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 SEC23AQ15436 765 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 ZRSR2Q15696 482 aaKnown RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 ASIC2Q16515 512 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 ASTE1Q2TB18 679 aaPredicted RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 CCDC152Q4G0S7 254 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 TDRD12Q587J7 1177 aaKnown RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 CCDC178Q5BJE1 867 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 ZMAT1Q5H9K5 638 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 EARS2Q5JPH6 523 aaKnown RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 MIIPQ5JXC2 388 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 ERMARDQ5T6L9 678 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 CDCA2Q69YH5 1023 aaPredicted RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 ANKRD40Q6AI12 368 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 LDHAL6AQ6ZMR3 332 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 KIF6Q6ZMV9 814 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 PIK3AP1Q6ZUJ8 805 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 TMTC3Q6ZXV5 915 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 BZW1Q7L1Q6 419 aaKnown RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 TAOK1Q7L7X3 1001 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 TRPM8Q7Z2W7 1104 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 PIGWQ7Z7B1 504 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 PNMA8AQ86V59 439 aaPredicted RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 COL23A1Q86Y22 540 aaPredicted RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 MFN1Q8IWA4 741 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 KLHL7Q8IXQ5 586 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 RBM12BQ8IXT5 1001 aaKnown RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 LMNTD2Q8IXW0 634 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 BLIDQ8IZY5 108 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 SYCE1Q8N0S2 351 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 MAGEB6Q8N7X4 407 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 C4orf32Q8N8J7 132 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 USP38Q8NB14 1042 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 DNERQ8NFT8 737 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 ZNF483Q8TF39 744 aaPredicted RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 THAP3Q8WTV1 239 aaPredicted RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 SCFD2Q8WU76 684 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 NSMCE1Q8WV22 266 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 ZCCHC14Q8WYQ9 949 aaKnown RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 LPIN2Q92539 896 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 MAGOHBQ96A72 148 aaKnown RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 TBC1D31Q96DN5 1066 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 SPDL1Q96EA4 605 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 CALML4Q96GE6 196 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 SCYL1Q96KG9 808 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 FAM210AQ96ND0 272 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 NAP1L3Q99457 506 aaPredicted RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 AGAP2Q99490 1192 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 FAM129AQ9BZQ8 928 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 RAB17Q9H0T7 212 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 NDST4Q9H3R1 872 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 ARMT1Q9H993 441 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 KIF9Q9HAQ2 790 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 MSL2Q9HCI7 577 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 RIC8AQ9NPQ8 531 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 INCENPQ9NQS7 918 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 ETAA1Q9NY74 926 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 PPP4R1LQ9P1A2 415 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 CEP72Q9P209 647 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 CTNNAL1Q9UBT7 734 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 SLC12A6Q9UHW9 1150 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 CNOT7Q9UIV1 285 aaKnown RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 DENND2AQ9ULE3 1009 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 SIK3Q9Y2K2 1263 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 PCDHA9Q9Y5H5 950 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 NFS1Q9Y697 457 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 BZW2Q9Y6E2 419 aaKnown RBP3.09□□□□□ -1.91
SLIRP-208ENST00000556956 ATP8B3O60423 1300 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 MROH5Q6ZUA9 1318 aa3.09□□□□□ -1.91
SLIRP-208ENST00000556956 PHRF1Q9P1Y6 1649 aaKnown RBP3.08□□□□□ -1.92
SLIRP-208ENST00000556956 STRCQ7RTU9 1775 aa3.08□□□□□ -1.92
SLIRP-208ENST00000556956 A0A0A6YYK5 440 aaPredicted RBP3.08□□□□□ -1.92
SLIRP-208ENST00000556956 CCDC194A0A1B0GVG4 234 aa3.08□□□□□ -1.92
SLIRP-208ENST00000556956 FRMD3A2A2Y4 597 aa3.08□□□□□ -1.92
SLIRP-208ENST00000556956 LRRD1A4D1F6 860 aa3.08□□□□□ -1.92
SLIRP-208ENST00000556956 LRRC53A6NM62 1247 aa3.08□□□□□ -1.92
SLIRP-208ENST00000556956 ERVV-2B6SEH9 535 aa3.08□□□□□ -1.92
SLIRP-208ENST00000556956 F8VZ95 297 aa3.08□□□□□ -1.92
SLIRP-208ENST00000556956 ACOT7O00154 380 aa3.08□□□□□ -1.92
SLIRP-208ENST00000556956 PGRMC1O00264 195 aaKnown RBP3.08□□□□□ -1.92
SLIRP-208ENST00000556956 KCNK3O14649 394 aa3.08□□□□□ -1.92
SLIRP-208ENST00000556956 RGS16O15492 202 aaPredicted RBP3.08□□□□□ -1.92
SLIRP-208ENST00000556956 NARSO43776 548 aaKnown RBP3.08□□□□□ -1.92
SLIRP-208ENST00000556956 CEP104O60308 925 aa3.08□□□□□ -1.92
SLIRP-208ENST00000556956 CTNND1O60716 968 aaKnown RBP3.08□□□□□ -1.92
SLIRP-208ENST00000556956 DIAPH2O60879 1101 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms