RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 TTC8Q8TAM2 541 aa12.53□□□□□ -0.4
VRK1-204ENST00000555351 WHAMMQ8TF30 809 aa12.53□□□□□ -0.4
VRK1-204ENST00000555351 CYFIP2Q96F07 1278 aa12.53□□□□□ -0.4
VRK1-204ENST00000555351 SMOQ99835 787 aa12.53□□□□□ -0.4
VRK1-204ENST00000555351 P2RY13Q9BPV8 354 aa12.53□□□□□ -0.4
VRK1-204ENST00000555351 UBXN6Q9BZV1 441 aa12.53□□□□□ -0.4
VRK1-204ENST00000555351 TLR8Q9NR97 1041 aaKnown RBP12.53□□□□□ -0.4
VRK1-204ENST00000555351 HMGXB4Q9UGU5 601 aa12.53□□□□□ -0.4
VRK1-204ENST00000555351 ARMCX3Q9UH62 379 aaPredicted RBP12.53□□□□□ -0.4
VRK1-204ENST00000555351 SCML2Q9UQR0 700 aa12.53□□□□□ -0.4
VRK1-204ENST00000555351 CPQQ9Y646 472 aa12.53□□□□□ -0.4
VRK1-204ENST00000555351 K7ESF4 209 aa12.52□□□□□ -0.41
VRK1-204ENST00000555351 CCDC130P13994 396 aa12.52□□□□□ -0.41
VRK1-204ENST00000555351 EIF2DP41214 584 aaKnown RBP12.52□□□□□ -0.41
VRK1-204ENST00000555351 PSEN1P49768 467 aa12.52□□□□□ -0.41
VRK1-204ENST00000555351 GALK1P51570 392 aa12.52□□□□□ -0.41
VRK1-204ENST00000555351 YWHAEP62258 255 aaKnown RBP12.52□□□□□ -0.41
VRK1-204ENST00000555351 ZXDBP98169 803 aa12.52□□□□□ -0.41
VRK1-204ENST00000555351 SATB1Q01826 763 aa12.52□□□□□ -0.41
VRK1-204ENST00000555351 KLHDC10Q6PID8 442 aa12.52□□□□□ -0.41
VRK1-204ENST00000555351 CLEC20AQ6ZU45 233 aa12.52□□□□□ -0.41
VRK1-204ENST00000555351 FILIP1Q7Z7B0 1213 aa12.52□□□□□ -0.41
VRK1-204ENST00000555351 LONP2Q86WA8 852 aa12.52□□□□□ -0.41
VRK1-204ENST00000555351 ADGRG2Q8IZP9 1017 aa12.52□□□□□ -0.41
VRK1-204ENST00000555351 CAMKK1Q8N5S9 505 aa12.52□□□□□ -0.41
VRK1-204ENST00000555351 SCAMP5Q8TAC9 235 aa12.52□□□□□ -0.41
VRK1-204ENST00000555351 CD101Q93033 1021 aa12.52□□□□□ -0.41
VRK1-204ENST00000555351 SECISBP2LQ93073 1101 aaKnown RBP12.52□□□□□ -0.41
VRK1-204ENST00000555351 SLC35C1Q96A29 364 aa12.52□□□□□ -0.41
VRK1-204ENST00000555351 CYLDQ9NQC7 956 aa12.52□□□□□ -0.41
VRK1-204ENST00000555351 RBM12Q9NTZ6 932 aaKnown RBP12.52□□□□□ -0.41
VRK1-204ENST00000555351 WNT6Q9Y6F9 365 aa12.52□□□□□ -0.41
VRK1-204ENST00000555351 BICDL2A1A5D9 508 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 HHLA1C9JL84 531 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 P4HA2O15460 535 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 COCHO43405 550 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 BEST1O76090 585 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 ABL1P00519 1130 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 PMS1P54277 932 aaKnown RBP12.51□□□□□ -0.41
VRK1-204ENST00000555351 MAP3K7CLP57077 242 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 MORC3Q14149 939 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 TCERG1LQ5VWI1 586 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 ARHGAP17Q68EM7 881 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 TSSK4Q6SA08 328 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 Q6ZS52 159 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 TRIML1Q8N9V2 468 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 SEMA4DQ92854 862 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 ELMO3Q96BJ8 720 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 EEF2KMTQ96G04 330 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 ZFRQ96KR1 1074 aaKnown RBP12.51□□□□□ -0.41
VRK1-204ENST00000555351 TWNKQ96RR1 684 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 DUSP16Q9BY84 665 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 LINC00597Q9H2U6 94 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 MMRN2Q9H8L6 949 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 CISHQ9NSE2 258 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 FAM49BQ9NUQ9 324 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 CHORDC1Q9UHD1 332 aaPredicted RBP12.51□□□□□ -0.41
VRK1-204ENST00000555351 MAN1B1Q9UKM7 699 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 KIAA1257Q9ULG3 409 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 ZNF292O60281 2723 aa12.51□□□□□ -0.41
VRK1-204ENST00000555351 FAM186AA6NE01 2351 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 TLR5O60602 858 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 GNA14O95837 355 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 ADH1CP00326 375 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 MBL2P11226 248 aaPredicted RBP12.5□□□□□ -0.41
VRK1-204ENST00000555351 CD58P19256 250 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 TBXAS1P24557 533 aaPredicted RBP12.5□□□□□ -0.41
VRK1-204ENST00000555351 RAD23BP54727 409 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 SLC8A3P57103 927 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 UBE2HP62256 183 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 IFRD2Q12894 506 aaPredicted RBP12.5□□□□□ -0.41
VRK1-204ENST00000555351 ORC1Q13415 861 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 PREPLQ4J6C6 727 aaPredicted RBP12.5□□□□□ -0.41
VRK1-204ENST00000555351 CBWD6Q4V339 395 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 DCAF17Q5H9S7 520 aaPredicted RBP12.5□□□□□ -0.41
VRK1-204ENST00000555351 CBWD3Q5JTY5 395 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 CBWD5Q5RIA9 395 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 SMYD5Q6GMV2 418 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 TTI2Q6NXR4 508 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 CCDC186Q7Z3E2 898 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 TADA2BQ86TJ2 420 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 WDR5BQ86VZ2 330 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 TMEM176AQ96HP8 235 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 CDK5RAP1Q96SZ6 601 aaKnown RBP12.5□□□□□ -0.41
VRK1-204ENST00000555351 CLIC5Q9NZA1 410 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 GMIPQ9P107 970 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 CFAP97Q9P2B7 532 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 SMG5Q9UPR3 1016 aaKnown RBP12.5□□□□□ -0.41
VRK1-204ENST00000555351 USP3Q9Y6I4 520 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 RIF1Q5UIP0 2472 aaKnown RBP12.5□□□□□ -0.41
VRK1-204ENST00000555351 VPS13AQ96RL7 3174 aa12.5□□□□□ -0.41
VRK1-204ENST00000555351 KIAA1549LQ6ZVL6 1849 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 A0A0A0MRY4 1105 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 TRIM49BA6NDI0 452 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.49□□□□□ -0.41
VRK1-204ENST00000555351 PPP1R3GB7ZBB8 358 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 LRP3O75074 770 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 RNF40O75150 1001 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 EGFP01133 1207 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 CYP17A1P05093 508 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms