RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 CLIC2O15247 247 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 TADA3O75528 432 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 CFIP05156 583 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 MYL1P05976 194 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 TMEM191BP0C7N4 346 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 HOXD12P35452 270 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 OPRD1P41143 372 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 NDUFA8P51970 172 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 MYL7Q01449 175 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 GFPT1Q06210 699 aaPredicted RBP12.6□□□□□ -0.39
SRP54-203ENST00000553544 STK4Q13043 487 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 USP4Q13107 963 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 HNRNPDQ14103 355 aaKnown RBP12.6□□□□□ -0.39
SRP54-203ENST00000553544 SNRNP35Q16560 246 aaKnown RBP12.6□□□□□ -0.39
SRP54-203ENST00000553544 KNOP1Q1ED39 458 aaKnown RBP12.6□□□□□ -0.39
SRP54-203ENST00000553544 DUOXA1Q1HG43 343 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 DUOXA2Q1HG44 320 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 KMT5BQ4FZB7 885 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 LYSMD4Q5XG99 296 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 ARMCX6Q7L4S7 300 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 HS2ST1Q7LGA3 356 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 LIMS2Q7Z4I7 341 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 WDR49Q8IV35 697 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 TMEM86AQ8N2M4 240 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 PGBD3Q8N328 593 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 PDCL2Q8N4E4 241 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 CHCHD4Q8N4Q1 142 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 XXYLT1Q8NBI6 393 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 TXNDC5Q8NBS9 432 aaKnown RBP12.6□□□□□ -0.39
SRP54-203ENST00000553544 KIAA0895Q8NCT3 520 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 TMEM174Q8WUU8 243 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 PNKPQ96T60 521 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 GZF1Q9H116 711 aaPredicted RBP12.6□□□□□ -0.39
SRP54-203ENST00000553544 DDX43Q9NXZ2 648 aaKnown RBP12.6□□□□□ -0.39
SRP54-203ENST00000553544 PILRBQ9UKJ0 227 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 SLC6A14Q9UN76 642 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 L1RE1Q9UN81 338 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 NUP205Q92621 2012 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 ANAPC1Q9H1A4 1944 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 A0A0A0MRY4 1105 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 C2orf78A6NCI8 922 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 SLC9A3R1O14745 358 aaPredicted RBP12.59□□□□□ -0.39
SRP54-203ENST00000553544 GABRDO14764 452 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 OPHN1O60890 802 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 KLF8O95600 359 aaPredicted RBP12.59□□□□□ -0.39
SRP54-203ENST00000553544 PFKLP17858 780 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 SYKP43405 635 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 TNFRSF4P43489 277 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 CYP24A1Q07973 514 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 PSMD6Q15008 389 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 ZNF423Q2M1K9 1284 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 CFAP221Q4G0U5 840 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 INTS6LQ5JSJ4 861 aaKnown RBP12.59□□□□□ -0.39
SRP54-203ENST00000553544 EOGTQ5NDL2 527 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 DPH6Q7L8W6 267 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 PROSER1Q86XN7 944 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 SPATA2LQ8IUW3 424 aaPredicted RBP12.59□□□□□ -0.39
SRP54-203ENST00000553544 SCN4BQ8IWT1 228 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 ALLCQ8N6M5 410 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 TOP6BLQ8N6T0 577 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 FRMD1Q8N878 549 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 KIAA1958Q8N8K9 716 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 IL17RCQ8NAC3 791 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 RDH13Q8NBN7 331 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 SPATA18Q8TC71 538 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 NOC3LQ8WTT2 800 aaKnown RBP12.59□□□□□ -0.39
SRP54-203ENST00000553544 ANKRD36BP1Q96IX9 119 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 GTPBP2Q9BX10 602 aaKnown RBP12.59□□□□□ -0.39
SRP54-203ENST00000553544 DMAC2Q9NW81 257 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 MBD1Q9UIS9 605 aaPredicted RBP12.59□□□□□ -0.39
SRP54-203ENST00000553544 ITPR1Q14643 2758 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 FREM2Q5SZK8 3169 aa12.59□□□□□ -0.39
SRP54-203ENST00000553544 ANTXRLA6NF34 631 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 LEFTY2O00292 366 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 AP5Z1O43299 807 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 CST3P01034 146 aaPredicted RBP12.58□□□□□ -0.4
SRP54-203ENST00000553544 APODP05090 189 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 SERPINF2P08697 491 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 KRT19P08727 400 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 HNRNPLP14866 589 aaKnown RBP eCLIP12.58□□□□□ -0.4
SRP54-203ENST00000553544 ITPKAP23677 461 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 ACAT1P24752 427 aaKnown RBP12.58□□□□□ -0.4
SRP54-203ENST00000553544 TIE1P35590 1138 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 ANP32AP39687 249 aaKnown RBP12.58□□□□□ -0.4
SRP54-203ENST00000553544 SLC6A11P48066 632 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 LHX1P48742 406 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 CYP2J2P51589 502 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 SOWAHAQ2M3V2 549 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 MAP7D1Q3KQU3 841 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 TRAPPC11Q7Z392 1133 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 RABEPKQ7Z6M1 372 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 SLC9A9Q8IVB4 645 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 GOLGA5Q8TBA6 731 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 HMGB4Q8WW32 186 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 ZNF516Q92618 1163 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 FUBP3Q96I24 572 aaKnown RBP eCLIP12.58□□□□□ -0.4
SRP54-203ENST00000553544 PKMYT1Q99640 499 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 CGRRF1Q99675 332 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 KCTD10Q9H3F6 313 aa12.58□□□□□ -0.4
SRP54-203ENST00000553544 GOLPH3LQ9H4A5 285 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms