RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 AP1B1Q10567 949 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 KCNV1Q6PIU1 500 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 DSTYKQ6XUX3 929 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 CENPUQ71F23 418 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 PDIK1LQ8N165 341 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 RUBCNQ92622 972 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 L3MBTL3Q96JM7 780 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-215ENST00000552823 KCNK16Q96T55 309 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 LGMNQ99538 433 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 PITPNM3Q9BZ71 974 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 FAM129AQ9BZQ8 928 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 ARHGAP39Q9C0H5 1083 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 LRRC4Q9HBW1 653 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 PTPRHQ9HD43 1115 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 WHRNQ9P202 907 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 ABT1Q9ULW3 272 aaKnown RBP5.84□□□□□ -1.47
LIMA1-215ENST00000552823 G3BP2Q9UN86 482 aaKnown RBP5.84□□□□□ -1.47
LIMA1-215ENST00000552823 KCNH4Q9UQ05 1017 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 NME7Q9Y5B8 376 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 SCN1AP35498 2009 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 IGKV6-21A0A0C4DH24 114 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 A0A0G2JND7 137 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 F8W810 466 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 PAPSS1O43252 624 aaPredicted RBP5.84□□□□□ -1.48
LIMA1-215ENST00000552823 BEST1O76090 585 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 UBOX5O94941 541 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 TRUB2O95900 331 aaKnown RBP5.84□□□□□ -1.48
LIMA1-215ENST00000552823 SRGAP2BP0DMP2 458 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 GHRP10912 638 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 VDRP11473 427 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 EIF4BP23588 611 aaKnown RBP5.84□□□□□ -1.48
LIMA1-215ENST00000552823 MLH1P40692 756 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 ADIGQ0VDE8 80 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 KLF1Q13351 362 aaPredicted RBP5.84□□□□□ -1.48
LIMA1-215ENST00000552823 SOWAHAQ2M3V2 549 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 ZNF792Q3KQV3 632 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 MARCH8Q5T0T0 291 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 ERMARDQ5T6L9 678 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 MROH9Q5TGP6 573 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 VSTM1Q6UX27 236 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 USP50Q70EL3 339 aaPredicted RBP5.84□□□□□ -1.48
LIMA1-215ENST00000552823 KIRREL3Q8IZU9 778 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 DEFB106AQ8N104 65 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 PNPLA1Q8N8W4 532 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 ARRDC4Q8NCT1 418 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 BEST2Q8NFU1 509 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 AGR3Q8TD06 166 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 PPM1EQ8WY54 764 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 CPT1BQ92523 772 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 TLCD1Q96CP7 247 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 SMC6Q96SB8 1091 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 SNRNP25Q9BV90 132 aaKnown RBP5.84□□□□□ -1.48
LIMA1-215ENST00000552823 TXLNGYQ9BZA5 131 aa5.84□□□□□ -1.48
LIMA1-215ENST00000552823 ZNF395Q9H8N7 513 aaPredicted RBP5.84□□□□□ -1.48
LIMA1-215ENST00000552823 PHIPQ8WWQ0 1821 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 SMIM28A0A1B0GU29 152 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 IGF2BP3O00425 579 aaKnown RBP eCLIP5.83□□□□□ -1.48
LIMA1-215ENST00000552823 SCAMP3O14828 347 aaKnown RBP5.83□□□□□ -1.48
LIMA1-215ENST00000552823 PMM2O15305 246 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 HUS1O60921 280 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 IL18RAPO95256 599 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 KRT7P08729 469 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 MCF2P10911 925 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 ADRA1DP25100 572 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 HOXA11P31270 313 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-215ENST00000552823 FOXN2P32314 431 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 ZNF132P52740 706 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 MFSD10Q14728 455 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 SLC1A5Q15758 541 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 CYP1B1Q16678 543 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 CCDC14Q49A88 953 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 CDCA2Q69YH5 1023 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-215ENST00000552823 LVRNQ6Q4G3 990 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 DENND5BQ6ZUT9 1274 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 HFE2Q6ZVN8 426 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 TRMT10CQ7L0Y3 403 aaKnown RBP5.83□□□□□ -1.48
LIMA1-215ENST00000552823 VSIG1Q86XK7 387 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 ALLCQ8N6M5 410 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 CCDC185Q8N715 623 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 ANKS4BQ8N8V4 417 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 GPR152Q8TDT2 470 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 SEC14L1Q92503 715 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 CELF6Q96J87 481 aaKnown RBP5.83□□□□□ -1.48
LIMA1-215ENST00000552823 MS4A4AQ96JQ5 239 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 ABHD16BQ9H3Z7 469 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.83□□□□□ -1.48
LIMA1-215ENST00000552823 SLC5A4Q9NY91 659 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 STRIP2Q9ULQ0 834 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.83□□□□□ -1.48
LIMA1-215ENST00000552823 TRIP12Q14669 1992 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-215ENST00000552823 TRIP11Q15643 1979 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 KBTBD13C9JR72 458 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 CYB561D2O14569 222 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 INHBAP08476 426 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 RPSAP08865 295 aaKnown RBP5.83□□□□□ -1.48
LIMA1-215ENST00000552823 NUDT17P0C025 328 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 ELNP15502 786 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 GOT1P17174 413 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 TPH1P17752 444 aa5.83□□□□□ -1.48
LIMA1-215ENST00000552823 BRCC3P46736 316 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms