RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	TTC7B	Q86TV6	843 aa		4.54	□□□□□ -1.68
USP44-208	ENST00000552440	ZFPM1	Q8IX07	1006 aa		4.54	□□□□□ -1.68
USP44-208	ENST00000552440	TAGAP	Q8N103	731 aa		4.54	□□□□□ -1.68
USP44-208	ENST00000552440	ADSSL1	Q8N142	457 aa		4.54	□□□□□ -1.68
USP44-208	ENST00000552440	TTC39C	Q8N584	583 aa		4.54	□□□□□ -1.68
USP44-208	ENST00000552440	PHOSPHO1	Q8TCT1	267 aa		4.54	□□□□□ -1.68
USP44-208	ENST00000552440	TBC1D22A	Q8WUA7	517 aa		4.54	□□□□□ -1.68
USP44-208	ENST00000552440	TBC1D5	Q92609	795 aa		4.54	□□□□□ -1.68
USP44-208	ENST00000552440	C16orf45	Q96MC5	204 aa	Predicted RBP	4.54	□□□□□ -1.68
USP44-208	ENST00000552440	RUNDC3B	Q96NL0	473 aa		4.54	□□□□□ -1.68
USP44-208	ENST00000552440	UIMC1	Q96RL1	719 aa		4.54	□□□□□ -1.68
USP44-208	ENST00000552440	GDF15	Q99988	308 aa		4.54	□□□□□ -1.68
USP44-208	ENST00000552440	LIN28A	Q9H9Z2	209 aa	Known RBP	4.54	□□□□□ -1.68
USP44-208	ENST00000552440	TMEM8A	Q9HCN3	771 aa		4.54	□□□□□ -1.68
USP44-208	ENST00000552440	PDE7B	Q9NP56	450 aa		4.54	□□□□□ -1.68
USP44-208	ENST00000552440	STK32B	Q9NY57	414 aa		4.54	□□□□□ -1.68
USP44-208	ENST00000552440	ZNF624	Q9P2J8	865 aa	Predicted RBP	4.54	□□□□□ -1.68
USP44-208	ENST00000552440	MYOT	Q9UBF9	498 aa		4.54	□□□□□ -1.68
USP44-208	ENST00000552440	MORF4L1	Q9UBU8	362 aa		4.54	□□□□□ -1.68
USP44-208	ENST00000552440	AFF4	Q9UHB7	1163 aa	Known RBP	4.54	□□□□□ -1.68
USP44-208	ENST00000552440	PCSK1N	Q9UHG2	260 aa		4.54	□□□□□ -1.68
USP44-208	ENST00000552440	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	CCDC78	A2IDD5	438 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	AKR1B15	C9JRZ8	316 aa	Predicted RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440		H3BUI4	141 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	PSMA7	O14818	248 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	ZBTB43	O43298	467 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	THAP12	O43422	761 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	ASNA1	O43681	348 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	AFP	P02771	609 aa	Known RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	TK1	P04183	234 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	ANXA2	P07355	339 aa	Known RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	PFKM	P08237	780 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	NPR1	P16066	1061 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	LAG3	P18627	525 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	RXRA	P19793	462 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	KRT2	P35908	639 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	RGS2	P41220	211 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	ZNF41	P51814	821 aa	Predicted RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	HK3	P52790	923 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	PNLIPRP1	P54315	467 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	POLE2	P56282	527 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	AIMP1	Q12904	312 aa	Known RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	NOG	Q13253	232 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	SMAD4	Q13485	552 aa	Known RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	OASL	Q15646	514 aa	Known RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	TTC38	Q5R3I4	469 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	UNQ6494/PRO21346	Q6UXR6	183 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	PIWIL3	Q7Z3Z3	882 aa	Known RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	CPLX4	Q7Z7G2	160 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	FAM126B	Q8IXS8	530 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	IL17RD	Q8NFM7	739 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	GABPB2	Q8TAK5	448 aa	Predicted RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	KCNG4	Q8TDN1	519 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	HSPH1	Q92598	858 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	USP6NL	Q92738	828 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	KRT35	Q92764	455 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	ARHGEF2	Q92974	986 aa	Known RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	HDAC10	Q969S8	669 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	SUCLG2	Q96I99	432 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	GBP4	Q96PP9	640 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	TUBGCP5	Q96RT8	1024 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	GORASP1	Q9BQQ3	440 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	ACE2	Q9BYF1	805 aa	Predicted RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	RXFP1	Q9HBX9	757 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	INCENP	Q9NQS7	918 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	PAPOLB	Q9NRJ5	636 aa	Known RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	DECR2	Q9NUI1	292 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	UBA2	Q9UBT2	640 aa	Predicted RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	PLA2G2D	Q9UNK4	145 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	ASB1	Q9Y576	335 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	PIAS3	Q9Y6X2	628 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	LMTK3	Q96Q04	1460 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	CLCA1	A8K7I4	914 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	VILL	O15195	856 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	SYNCRIP	O60506	623 aa	Known RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	KLHL41	O60662	606 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	KERA	O60938	352 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	SEC22B	O75396	215 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	PIAS2	O75928	621 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	APOL3	O95236	402 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	NDST3	O95803	873 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	PRL	P01236	227 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	C8B	P07358	591 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	HSPA1A	P0DMV8	641 aa	Known RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	HSPA1B	P0DMV9	641 aa	Known RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	ZNF20	P17024	532 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	TNFRSF1A	P19438	455 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	EN2	P19622	333 aa	Predicted RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	BTF3	P20290	206 aa	Known RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	THPO	P40225	353 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	AARS	P49588	968 aa	Known RBP eCLIP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	TKTL1	P51854	596 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	CCT2	P78371	535 aa	Known RBP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	CDK17	Q00537	523 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	4.53	□□□□□ -1.68
USP44-208	ENST00000552440	C17orf67	Q0P5P2	114 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	GALNT2	Q10471	571 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	NAA25	Q14CX7	972 aa		4.53	□□□□□ -1.68
USP44-208	ENST00000552440	TBCE	Q15813	527 aa	Predicted RBP	4.53	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms