RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 R3HCC1Q9Y3T6 440 aaKnown RBP7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 MAP4K5Q9Y4K4 846 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 PAXBP1Q9Y5B6 917 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 EPN1Q9Y6I3 576 aaPredicted RBP7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 STYXL1Q9Y6J8 313 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 PATJQ8NI35 1801 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 DOCK8Q8NF50 2099 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 SSU72P8A0A1W2PR75 194 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 TMEM8BA6NDV4 472 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 EIF3CLB5ME19 914 aaKnown RBP7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 ANKRD63C9JTQ0 380 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 OGTO15294 1046 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 AKR1B10O60218 316 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 KIF5CO60282 957 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 KIF4AO95239 1232 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 EFEMP2O95967 443 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 RHOP08100 348 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 AKAP5P24588 427 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 PON1P27169 355 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 GDI1P31150 447 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 HOXA9P31269 272 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 HOXA11P31270 313 aaPredicted RBP7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 CNR2P34972 360 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 MPLP40238 635 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 SOX9P48436 509 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 PXNP49023 591 aaPredicted RBP7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 PTENP60484 403 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 POU5F1Q01860 360 aaKnown RBP7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 CYP24A1Q07973 514 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 RAPGEF1Q13905 1077 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 LRRC32Q14392 662 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 GAS6Q14393 721 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 PSMD6Q15008 389 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 FAM187BQ17R55 369 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 ARHGAP29Q52LW3 1261 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 WDR44Q5JSH3 913 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 C10orf76Q5T2E6 689 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 XP32Q5T750 250 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 KLHDC7AQ5VTJ3 777 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 FAM171A1Q5VUB5 890 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 KRT39Q6A163 491 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 SV2AQ7L0J3 742 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 ENOSF1Q7L5Y1 443 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 SPEM1Q8N4L4 309 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 KIF18AQ8NI77 898 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 ELSPBP1Q96BH3 223 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 CPB2Q96IY4 423 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 PPP1R13BQ96KQ4 1090 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 NT5C1BQ96P26 610 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 EIF3CQ99613 913 aaKnown RBP7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 FAM213AQ9BRX8 229 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 CRACR2AQ9BSW2 395 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 TTPALQ9BTX7 342 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 TRMT61BQ9BVS5 477 aaKnown RBP7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 TARS2Q9BW92 718 aaKnown RBP7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 IMPG2Q9BZV3 1241 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 INTS2Q9H0H0 1204 aaKnown RBP7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 NHEJ1Q9H9Q4 299 aaPredicted RBP7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 UBN1Q9NPG3 1134 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 NLRC4Q9NPP4 1024 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 C2orf42Q9NWW7 574 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 TRMT1Q9NXH9 659 aaKnown RBP7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 RBAKQ9NYW8 714 aaPredicted RBP7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 KLK14Q9P0G3 267 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 ANKFY1Q9P2R3 1169 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 MYO1AQ9UBC5 1043 aa7.57□□□□□ -1.2
DEPDC4-208ENST00000549341 A0A0B4J269 797 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 GOLGA8IPA6NC78 632 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 SOWAHDA6NJG2 315 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 LRRC53A6NM62 1247 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 GOLGA8JA6NMD2 632 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 SLC38A8A6NNN8 435 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 K7ESF4 209 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 TM4SF5O14894 197 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 KRT86O43790 486 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 PHACTR2O75167 634 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 RPP40O75818 363 aaKnown RBP7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 GFPT2O94808 682 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 EPN2O95208 641 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 IL18RAPO95256 599 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 NDUFA10O95299 355 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 F12P00748 615 aaPredicted RBP7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 ZNF806P0C7X5 589 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 TRIM49P0CI25 452 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 TRIM49CP0CI26 452 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 UCHL3P15374 230 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 TNNI1P19237 187 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 FCARP24071 287 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 KLK7P49862 253 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 MFAP3P55082 362 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 GOLGA8FQ08AF8 430 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 GOLGA8DPQ0D2H9 430 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 KLHL30Q0D2K2 578 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 KIF5AQ12840 1032 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 C4orf48Q5BLP8 95 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 FAM78AQ5JUQ0 283 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 SH3PXD2AQ5TCZ1 1133 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 ATF7IP2Q5U623 682 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 E4F1Q66K89 784 aaPredicted RBP7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 MPZL3Q6UWV2 235 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms