RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 APBA2Q99767 749 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 SNRNP25Q9BV90 132 aaKnown RBP11.59□□□□□ -0.55
CUX1-212ENST00000547394 MAK16Q9BXY0 300 aaKnown RBP11.59□□□□□ -0.55
CUX1-212ENST00000547394 AGO3Q9H9G7 860 aaKnown RBP11.59□□□□□ -0.55
CUX1-212ENST00000547394 GGT7Q9UJ14 662 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 TPX2Q9ULW0 747 aaKnown RBP11.59□□□□□ -0.55
CUX1-212ENST00000547394 UBQLN1Q9UMX0 589 aaKnown RBP11.59□□□□□ -0.55
CUX1-212ENST00000547394 MYO1CO00159 1063 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 SDC4P31431 198 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 GBP1P32455 592 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 HDAC4P56524 1084 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 PRKCZQ05513 592 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 IFT88Q13099 833 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 PKDCCQ504Y2 493 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 PPP1R2P3Q6NXS1 205 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 TRMT10CQ7L0Y3 403 aaKnown RBP11.59□□□□□ -0.55
CUX1-212ENST00000547394 CCDC185Q8N715 623 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 C3orf58Q8NDZ4 430 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.59□□□□□ -0.55
CUX1-212ENST00000547394 CEP41Q9BYV8 373 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 DHX35Q9H5Z1 703 aaKnown RBP11.59□□□□□ -0.55
CUX1-212ENST00000547394 HOMER3Q9NSC5 361 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 PIH1D1Q9NWS0 290 aaKnown RBP11.59□□□□□ -0.55
CUX1-212ENST00000547394 WDR35Q9P2L0 1181 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 INPP5FQ9Y2H2 1132 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 FAM169AQ9Y6X4 670 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 MANSC4A6NHS7 340 aaPredicted RBP11.58□□□□□ -0.56
CUX1-212ENST00000547394 PIRO00625 290 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 MYCP01106 439 aaPredicted RBP11.58□□□□□ -0.56
CUX1-212ENST00000547394 POMCP01189 267 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 GHRP10912 638 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 IL4RP24394 825 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 CLCNKBP51801 687 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 SLC6A3Q01959 620 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 ADIGQ0VDE8 80 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 BBS9Q3SYG4 887 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 C6orf118Q5T5N4 469 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 RNASEH2BQ5TBB1 312 aaKnown RBP11.58□□□□□ -0.56
CUX1-212ENST00000547394 BBS12Q6ZW61 710 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 POLNQ7Z5Q5 900 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 ARFGAP2Q8N6H7 521 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 CMASQ8NFW8 434 aaPredicted RBP11.58□□□□□ -0.56
CUX1-212ENST00000547394 CPT1BQ92523 772 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 PGM2Q96G03 612 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 PAIP2Q9BPZ3 127 aaKnown RBP11.58□□□□□ -0.56
CUX1-212ENST00000547394 WDR83Q9BRX9 315 aaKnown RBP11.58□□□□□ -0.56
CUX1-212ENST00000547394 C12orf65Q9H3J6 166 aaKnown RBP11.58□□□□□ -0.56
CUX1-212ENST00000547394 PLEKHA5Q9HAU0 1116 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 NAALADL1Q9UQQ1 740 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 TMEM120BA0PK00 339 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 GMNCA6NCL1 334 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 UNCXA6NJT0 531 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 TRAPPC3O43617 180 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 CHRNA1P02708 482 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 CCND3P30281 292 aaPredicted RBP11.58□□□□□ -0.56
CUX1-212ENST00000547394 LIG3P49916 1009 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 SCNN1GP51170 649 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 CACNA2D1P54289 1103 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 ZKSCAN8Q15776 578 aaPredicted RBP11.58□□□□□ -0.56
CUX1-212ENST00000547394 KYAT1Q16773 422 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 MDH1BQ5I0G3 518 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 RNF187Q5TA31 235 aaPredicted RBP11.58□□□□□ -0.56
CUX1-212ENST00000547394 HFE2Q6ZVN8 426 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 SYDE1Q6ZW31 735 aaPredicted RBP11.58□□□□□ -0.56
CUX1-212ENST00000547394 ZCCHC9Q8N567 271 aaKnown RBP11.58□□□□□ -0.56
CUX1-212ENST00000547394 FNIP1Q8TF40 1166 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 PRCCQ92733 491 aaPredicted RBP11.58□□□□□ -0.56
CUX1-212ENST00000547394 THOC1Q96FV9 657 aaKnown RBP11.58□□□□□ -0.56
CUX1-212ENST00000547394 XPO6Q96QU8 1125 aaKnown RBP11.58□□□□□ -0.56
CUX1-212ENST00000547394 KCNK16Q96T55 309 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 INTS9Q9NV88 658 aaKnown RBP11.58□□□□□ -0.56
CUX1-212ENST00000547394 TMEM30AQ9NV96 361 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 ETNK2Q9NVF9 386 aa11.58□□□□□ -0.56
CUX1-212ENST00000547394 CYB561D2O14569 222 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 HUS1O60921 280 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 AKR1A1P14550 325 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 THPOP40225 353 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 MMP13P45452 471 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 TAF6P49848 677 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 CRYBB1P53674 252 aaPredicted RBP11.57□□□□□ -0.56
CUX1-212ENST00000547394 MAP3K7CLP57077 242 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 GBE1Q04446 702 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 SPRED3Q2MJR0 410 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 PIGZQ86VD9 579 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 IGDCC3Q8IVU1 814 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 C4orf33Q8N1A6 199 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 STKLD1Q8NE28 680 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 PCDH19Q8TAB3 1148 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 P3H4Q92791 437 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 NKD2Q969F2 451 aaPredicted RBP11.57□□□□□ -0.56
CUX1-212ENST00000547394 KLF6Q99612 283 aaPredicted RBP11.57□□□□□ -0.56
CUX1-212ENST00000547394 MED10Q9BTT4 135 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 ZFYVE28Q9HCC9 887 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 EXOC1LA0A1B0GW35 172 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 MCF2LO15068 1137 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 KCNN4O15554 427 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 ITGAVP06756 1048 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 VIMP08670 466 aaKnown RBP11.57□□□□□ -0.56
CUX1-212ENST00000547394 RBL1P28749 1068 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 CD52P31358 61 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms