RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 GPM6BQ13491 265 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 EXD1Q8NHP7 514 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 TPCN2Q8NHX9 752 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 SLC20A1Q8WUM9 679 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 TFB1MQ8WVM0 346 aaKnown RBP8.09□□□□□ -1.11
VPS13D-211ENST00000543710 INPP5DQ92835 1189 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 CASP10Q92851 521 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 NECTIN4Q96NY8 510 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 HAPLN3Q96S86 360 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 YIPF2Q9BWQ6 316 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 POLMQ9NP87 494 aaPredicted RBP8.09□□□□□ -1.11
VPS13D-211ENST00000543710 ZFATQ9P243 1243 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 NXF1Q9UBU9 619 aaKnown RBP8.09□□□□□ -1.11
VPS13D-211ENST00000543710 PLA2G4CQ9UP65 541 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 TMEM114B3SHH9 223 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 C5orf58C9J3I9 102 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 TRDMT1O14717 391 aaKnown RBP8.09□□□□□ -1.11
VPS13D-211ENST00000543710 CAMTA2O94983 1202 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 HIST1H2AGP0C0S8 130 aaPredicted RBP8.09□□□□□ -1.11
VPS13D-211ENST00000543710 UCHL3P15374 230 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 HIST1H2ADP20671 130 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 CXCR5P32302 372 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 LSP1P33241 339 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 SLCO1A2P46721 670 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 PRAMEP78395 509 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 TP53BP2Q13625 1128 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 CACHD1Q5VU97 1274 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 WDR49Q8IV35 697 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 ABTB1Q969K4 478 aaPredicted RBP8.09□□□□□ -1.11
VPS13D-211ENST00000543710 VPS33AQ96AX1 596 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 NSUN4Q96CB9 384 aaKnown RBP8.09□□□□□ -1.11
VPS13D-211ENST00000543710 HIST1H2AHQ96KK5 128 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 CGRRF1Q99675 332 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 HIST1H2AJQ99878 128 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 H2AFJQ9BTM1 129 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 NIF3L1Q9GZT8 377 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 RXFP1Q9HBX9 757 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 ADA2Q9NZK5 511 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 TCP11X1B4DZS4 312 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 SLC16A4O15374 487 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 RBP1P09455 135 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 CKBP12277 381 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 TTKP33981 857 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 COPAP53621 1224 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 ERVK-9P63128 1117 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 ERVK-24P63145 666 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 SKOR1P84550 965 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 QRICH1Q2TAL8 776 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 SYTL3Q4VX76 610 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 TLK2Q86UE8 772 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 TJP2Q9UDY2 1190 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 SLC25A13Q9UJS0 675 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 COG5Q9UP83 839 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 RNF103-CHMP3A0A140T963 221 aa8.09□□□□□ -1.12
VPS13D-211ENST00000543710 ASMTLO95671 621 aa8.09□□□□□ -1.12
VPS13D-211ENST00000543710 KCNA3P22001 575 aa8.09□□□□□ -1.12
VPS13D-211ENST00000543710 GRIK1P39086 918 aa8.09□□□□□ -1.12
VPS13D-211ENST00000543710 TRMT5Q32P41 509 aaKnown RBP8.09□□□□□ -1.12
VPS13D-211ENST00000543710 TTLL9Q3SXZ7 439 aa8.09□□□□□ -1.12
VPS13D-211ENST00000543710 FAM102AQ5T9C2 384 aaPredicted RBP8.09□□□□□ -1.12
VPS13D-211ENST00000543710 E2F7Q96AV8 911 aa8.09□□□□□ -1.12
VPS13D-211ENST00000543710 SEPT5Q99719 369 aaPredicted RBP8.09□□□□□ -1.12
VPS13D-211ENST00000543710 KLHL4Q9C0H6 718 aa8.09□□□□□ -1.12
VPS13D-211ENST00000543710 ZC3H7BQ9UGR2 993 aaKnown RBP8.09□□□□□ -1.12
VPS13D-211ENST00000543710 USP20Q9Y2K6 914 aa8.09□□□□□ -1.12
VPS13D-211ENST00000543710 NMT2O60551 498 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 ABHD2P08910 425 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 ATXN8OSP0DMR3 200 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 VDRP11473 427 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 RARGP13631 454 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 CD58P19256 250 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 JAK1P23458 1154 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 NAMPTP43490 491 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 EMC2Q15006 297 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 TRIP13Q15645 432 aaPredicted RBP8.08□□□□□ -1.12
VPS13D-211ENST00000543710 MGAT5BQ3V5L5 792 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 OLFML2BQ68BL8 750 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 PPM1NQ8N819 430 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 FAM162AQ96A26 154 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 REPS1Q96D71 796 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 DACH2Q96NX9 599 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 SLC9A7Q96T83 725 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 TBCBQ99426 244 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.08□□□□□ -1.12
VPS13D-211ENST00000543710 OLA1Q9NTK5 396 aaKnown RBP8.08□□□□□ -1.12
VPS13D-211ENST00000543710 MTMR4Q9NYA4 1195 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 CORO2BQ9UQ03 480 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 TRIM49BA6NDI0 452 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 H3BQF6 201 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 C2CD2LO14523 706 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 DYRK3O43781 588 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 DIAPH2O60879 1101 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 ODC1P11926 461 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 PIK3CGP48736 1102 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 ST13P50502 369 aaKnown RBP8.08□□□□□ -1.12
VPS13D-211ENST00000543710 USP4Q13107 963 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 PDIA6Q15084 440 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 C11orf88Q6PI97 169 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 CYP4Z2PQ8N1L4 340 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 SLC7A14Q8TBB6 771 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms