RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 SLC2A14Q8TDB8 520 aa17.06■□□□□ 0.32
COL4A1-204ENST00000543140 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.06■□□□□ 0.32
COL4A1-204ENST00000543140 LRRN4Q8WUT4 740 aa17.06■□□□□ 0.32
COL4A1-204ENST00000543140 P3H4Q92791 437 aa17.06■□□□□ 0.32
COL4A1-204ENST00000543140 TCRBV7S3A2A0A539 114 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 MEIS3P2A8K0S8 358 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 POC1B-GALNT4F8VUJ3 575 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 ENDOD1O94919 500 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 DRD4P21917 467 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 ATXN1P54253 815 aaKnown RBP17.05■□□□□ 0.32
COL4A1-204ENST00000543140 IFT88Q13099 833 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 STAT4Q14765 748 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 TMED2Q15363 201 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 HIF1AQ16665 826 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 PPP6R3Q5H9R7 873 aaPredicted RBP17.05■□□□□ 0.32
COL4A1-204ENST00000543140 CENPUQ71F23 418 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 TAX1BP1Q86VP1 789 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 IFNL1Q8IU54 200 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 APBA2Q99767 749 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 ADAM33Q9BZ11 813 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 FARP1Q9Y4F1 1045 aaPredicted RBP17.05■□□□□ 0.32
COL4A1-204ENST00000543140 HEY1Q9Y5J3 304 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 A0A087WUV0 522 aaPredicted RBP17.05■□□□□ 0.32
COL4A1-204ENST00000543140 ATP2C2O75185 946 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 CDH16O75309 829 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 TCEA3O75764 348 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 IL4RP24394 825 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 CTGFP29279 349 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 ATP5DP30049 168 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 TAF6P49848 677 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 BASP1P80723 227 aaKnown RBP17.05■□□□□ 0.32
COL4A1-204ENST00000543140 MSS51Q4VC12 460 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 FNBP1LQ5T0N5 605 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 VSTM1Q6UX27 236 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 CEP128Q6ZU80 1094 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 PPIL6Q8IXY8 311 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 ANKRD52Q8NB46 1076 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 ZNF560Q96MR9 790 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 ZNF317Q96PQ6 595 aaPredicted RBP17.05■□□□□ 0.32
COL4A1-204ENST00000543140 RNF157Q96PX1 679 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 KATNAL1Q9BW62 490 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 FRMD8P1Q9BZ68 369 aaPredicted RBP17.05■□□□□ 0.32
COL4A1-204ENST00000543140 MAGEB5Q9BZ81 275 aa17.05■□□□□ 0.32
COL4A1-204ENST00000543140 H7C0C1 242 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 PIAS1O75925 651 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 SETSIPP0DME0 302 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 BRAFP15056 766 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 KCNE1P15382 129 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 ATP5OP48047 213 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 HDAC4P56524 1084 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 LILRA4P59901 499 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 BST2Q10589 180 aaKnown RBP17.04■□□□□ 0.32
COL4A1-204ENST00000543140 MPP2Q14168 576 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 GNASQ5JWF2 1037 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 ARHGAP17Q68EM7 881 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 FAM228AQ86W67 206 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 NDRG1Q92597 394 aaKnown RBP17.04■□□□□ 0.32
COL4A1-204ENST00000543140 SEC16BQ96JE7 1060 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 SNRNP25Q9BV90 132 aaKnown RBP17.04■□□□□ 0.32
COL4A1-204ENST00000543140 ALOX15BO15296 676 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 HUS1O60921 280 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 ACAT1P24752 427 aaKnown RBP17.04■□□□□ 0.32
COL4A1-204ENST00000543140 ROR1Q01973 937 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 IRF5Q13568 498 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 BOLA3Q53S33 107 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 RNF187Q5TA31 235 aaPredicted RBP17.04■□□□□ 0.32
COL4A1-204ENST00000543140 CXCL17Q6UXB2 119 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 MAP7D3Q8IWC1 876 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 ADGRF2Q8IZF7 708 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 CRYBG2Q8N1P7 616 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 TRPV1Q8NER1 839 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 DYDC1Q8WWB3 177 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 GDAP2Q9NXN4 497 aa17.04■□□□□ 0.32
COL4A1-204ENST00000543140 DPYSL4O14531 572 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 XPOTO43592 962 aaKnown RBP17.03■□□□□ 0.32
COL4A1-204ENST00000543140 KIAA0754O94854 1291 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 PGK1P00558 417 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 VIMP08670 466 aaKnown RBP17.03■□□□□ 0.32
COL4A1-204ENST00000543140 ABHD2P08910 425 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 CTSHP09668 335 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 GNAT1P11488 350 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 GCAP28676 217 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 TKTP29401 623 aaKnown RBP17.03■□□□□ 0.32
COL4A1-204ENST00000543140 BCAT1P54687 386 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 CRHR2Q13324 411 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 TFDP2Q14188 446 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 NOMO1Q15155 1222 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 ANKRD20A8PQ5CZ79 823 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 XKR4Q5GH76 650 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 PCGF5Q86SE9 256 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 LRRC34Q8IZ02 419 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 PLD5Q8N7P1 536 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 NAT8LQ8N9F0 302 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 TTC25Q96NG3 672 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 PCDH18Q9HCL0 1135 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 PTGESO14684 152 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 TMEM63AO94886 807 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 MYCNP04198 464 aaPredicted RBP17.03■□□□□ 0.32
COL4A1-204ENST00000543140 RARBP10826 455 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 LIG3P49916 1009 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms