RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 USP41Q3LFD5 358 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 PPP1R26Q5T8A7 1209 aaPredicted RBP13.11□□□□□ -0.31
SMAD3-204ENST00000540846 LRRC38Q5VT99 294 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 EMBQ6PCB8 327 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 DCUN1D2Q6PH85 259 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 PRSS55Q6UWB4 352 aaPredicted RBP13.11□□□□□ -0.31
SMAD3-204ENST00000540846 TTC30AQ86WT1 665 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 METTL23Q86XA0 190 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 CEP57Q86XR8 500 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 XYLT1Q86Y38 959 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 KATNAL2Q8IYT4 538 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 FUKQ8N0W3 1084 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 KRT222Q8N1A0 295 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 PRELID2Q8N945 189 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 CCDC26Q8TAB7 109 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 SEC14L1Q92503 715 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 TNIP3Q96KP6 325 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 ZCWPW1Q9H0M4 648 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 ZBP1Q9H171 429 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 EPB41L5Q9HCM4 733 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 FAM49BQ9NUQ9 324 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 MTRRQ9UBK8 725 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 TJP2Q9UDY2 1190 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 GREB1Q4ZG55 1949 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 FSCN2O14926 492 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 ADAM12O43184 909 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 VNN2O95498 520 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 DNAJB1P25685 340 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 CHRNA3P32297 505 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 PLA2G4AP47712 749 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 ERVK-21P61565 698 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 OGDHQ02218 1023 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 CUL1Q13616 776 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 DHX34Q14147 1143 aaKnown RBP13.1□□□□□ -0.31
SMAD3-204ENST00000540846 GOLGA7BQ2TAP0 167 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 ZNF280DQ6N043 979 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 ANKS3Q6ZW76 656 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 GPR65Q8IYL9 337 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 ZDHHC14Q8IZN3 488 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 C12orf50Q8NA57 414 aaPredicted RBP13.1□□□□□ -0.31
SMAD3-204ENST00000540846 MYCBPAPQ8TBZ2 947 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 IPO4Q8TEX9 1081 aaKnown RBP13.1□□□□□ -0.31
SMAD3-204ENST00000540846 CASKIN2Q8WXE0 1202 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.1□□□□□ -0.31
SMAD3-204ENST00000540846 CAVIN3Q969G5 261 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 MCRS1Q96EZ8 462 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 PCED1BQ96HM7 432 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 B3GNT5Q9BYG0 378 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 MIS12Q9H081 205 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 VIPAS39Q9H9C1 493 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 TMEM30AQ9NV96 361 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 AMACRQ9UHK6 382 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 MTUS1Q9ULD2 1270 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 LZTS1Q9Y250 596 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 RWDD3Q9Y3V2 267 aa13.1□□□□□ -0.31
SMAD3-204ENST00000540846 SPDYE4A6NLX3 237 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 GOLGA8SH3BPF8 625 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 OR4Q2P0C623 313 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 KRT3P12035 628 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 GLUD2P49448 558 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 CARSP49589 748 aaKnown RBP13.09□□□□□ -0.31
SMAD3-204ENST00000540846 NNTQ13423 1086 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 CAMK1Q14012 370 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 CTXN3Q4LDR2 81 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 MDH1BQ5I0G3 518 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 DAB2IPQ5VWQ8 1189 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 SLC8B1Q6J4K2 584 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 CHRDL2Q6WN34 429 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 ADAT2Q7Z6V5 191 aaKnown RBP13.09□□□□□ -0.31
SMAD3-204ENST00000540846 VPS52Q8N1B4 723 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 THEM5Q8N1Q8 247 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 EXD1Q8NHP7 514 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 SPPL3Q8TCT6 385 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 SLC2A14Q8TDB8 520 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 RIN2Q8WYP3 895 aaPredicted RBP13.09□□□□□ -0.31
SMAD3-204ENST00000540846 HNRNPABQ99729 332 aaKnown RBP13.09□□□□□ -0.31
SMAD3-204ENST00000540846 HINFPQ9BQA5 517 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 UBXN6Q9BZV1 441 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 DNAI2Q9GZS0 605 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 SYNCQ9H7C4 482 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 PCYOX1Q9UHG3 505 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 BACE2Q9Y5Z0 518 aa13.09□□□□□ -0.31
SMAD3-204ENST00000540846 TCRBV7S2A1N4TA0A589 114 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 ESYT3A0FGR9 886 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 FAM187AA6NFU0 413 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 OR6C75A6NL08 312 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 CLDN5O00501 218 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 TTI1O43156 1089 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 RB1P06400 928 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 CTSAP10619 480 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 RFC1P35251 1148 aaPredicted RBP13.08□□□□□ -0.32
SMAD3-204ENST00000540846 TNNT3P45378 269 aaPredicted RBP13.08□□□□□ -0.32
SMAD3-204ENST00000540846 CACNA2D1P54289 1103 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 DR1Q01658 176 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 MLLT1Q03111 559 aaPredicted RBP13.08□□□□□ -0.32
SMAD3-204ENST00000540846 RAB30Q15771 203 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 PSMD5Q16401 504 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 POLNQ7Z5Q5 900 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 FAM35AQ86V20 835 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 UBA3Q8TBC4 463 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms