RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 INPP5FQ9Y2H2 1132 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 CYB561D2O14569 222 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 DCTN3O75935 186 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 TGM2P21980 687 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 RPL22P35268 128 aaKnown RBP11.23□□□□□ -0.61
CLIP1-213ENST00000540338 GARSP41250 739 aaKnown RBP11.23□□□□□ -0.61
CLIP1-213ENST00000540338 PRPSAP1Q14558 356 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 ZNF792Q3KQV3 632 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 ZNF467Q7Z7K2 595 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-213ENST00000540338 MAGEB18Q96M61 343 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 XYLT2Q9H1B5 865 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 FAM124BQ9H5Z6 455 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-213ENST00000540338 SLC12A6Q9UHW9 1150 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 KRT4P19013 534 aa11.22□□□□□ -0.61
CLIP1-213ENST00000540338 DEUP1Q05D60 604 aa11.22□□□□□ -0.61
CLIP1-213ENST00000540338 FAXCQ5TGI0 409 aa11.22□□□□□ -0.61
CLIP1-213ENST00000540338 AP4E1Q9UPM8 1137 aa11.22□□□□□ -0.61
CLIP1-213ENST00000540338 EDN1P05305 212 aa11.22□□□□□ -0.61
CLIP1-213ENST00000540338 FAM200BP0CF97 657 aa11.22□□□□□ -0.61
CLIP1-213ENST00000540338 MAP2K5Q13163 448 aa11.22□□□□□ -0.61
CLIP1-213ENST00000540338 PTK7Q13308 1070 aa11.22□□□□□ -0.61
CLIP1-213ENST00000540338 DPYSL3Q14195 570 aa11.22□□□□□ -0.61
CLIP1-213ENST00000540338 PPP1R26Q5T8A7 1209 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-213ENST00000540338 THEM5Q8N1Q8 247 aa11.22□□□□□ -0.61
CLIP1-213ENST00000540338 FAM193BQ96PV7 902 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-213ENST00000540338 BCO2Q9BYV7 579 aa11.22□□□□□ -0.61
CLIP1-213ENST00000540338 SIX4Q9UIU6 781 aa11.22□□□□□ -0.61
CLIP1-213ENST00000540338 GGT7Q9UJ14 662 aa11.22□□□□□ -0.61
CLIP1-213ENST00000540338 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-213ENST00000540338 PPP1R12AO14974 1030 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-213ENST00000540338 SSTR1P30872 391 aa11.22□□□□□ -0.61
CLIP1-213ENST00000540338 SIX1Q15475 284 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-213ENST00000540338 FBXW10Q5XX13 1052 aa11.22□□□□□ -0.61
CLIP1-213ENST00000540338 YTHDF3Q7Z739 585 aaKnown RBP11.22□□□□□ -0.61
CLIP1-213ENST00000540338 TRIM55Q9BYV6 548 aa11.22□□□□□ -0.61
CLIP1-213ENST00000540338 SMIM35A0A1B0GVV1 85 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 F5H423 210 aaPredicted RBP11.21□□□□□ -0.61
CLIP1-213ENST00000540338 ALOX15BO15296 676 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 ZWINTO95229 277 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 DARSP14868 501 aaKnown RBP11.21□□□□□ -0.61
CLIP1-213ENST00000540338 TCF4P15884 667 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 CYP2F1P24903 491 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 CFAP157Q5JU67 520 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 PID1Q7Z2X4 250 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 ZDHHC14Q8IZN3 488 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 BRI3BPQ8WY22 251 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 RILPQ96NA2 401 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 RNF157Q96PX1 679 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 LRRC37BQ96QE4 947 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 PAFAH2Q99487 392 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 KLF6Q99612 283 aaPredicted RBP11.21□□□□□ -0.61
CLIP1-213ENST00000540338 MRPL45Q9BRJ2 306 aaKnown RBP11.21□□□□□ -0.61
CLIP1-213ENST00000540338 ABT1Q9ULW3 272 aaKnown RBP11.21□□□□□ -0.61
CLIP1-213ENST00000540338 ACTL7BQ9Y614 415 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 DRD4P21917 467 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 CDH5P33151 784 aaPredicted RBP11.21□□□□□ -0.61
CLIP1-213ENST00000540338 OGDHQ02218 1023 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 TAF2Q6P1X5 1199 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 LVRNQ6Q4G3 990 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 FAM131BQ86XD5 332 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 SLC2A14Q8TDB8 520 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 ATXN2LQ8WWM7 1075 aaKnown RBP11.21□□□□□ -0.61
CLIP1-213ENST00000540338 PTPRHQ9HD43 1115 aa11.21□□□□□ -0.61
CLIP1-213ENST00000540338 UNCXA6NJT0 531 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 CCDC130P13994 396 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 PCSK1P29120 753 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 SLC8A1P32418 973 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 GPD2P43304 727 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 BEX3Q00994 111 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 MMRN1Q13201 1228 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 CCDC6Q16204 474 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 SMYD5Q6GMV2 418 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 MCUR1Q96AQ8 359 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 TWNKQ96RR1 684 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 SLC45A1Q9Y2W3 748 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 MANSC4A6NHS7 340 aaPredicted RBP11.21□□□□□ -0.62
CLIP1-213ENST00000540338 M0QYT0 321 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 PROZP22891 400 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 ACTN3Q08043 901 aaPredicted RBP11.21□□□□□ -0.62
CLIP1-213ENST00000540338 DNAJC3Q13217 504 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 PDK1Q15118 436 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 PKN2Q16513 984 aaKnown RBP11.21□□□□□ -0.62
CLIP1-213ENST00000540338 EMC10Q5UCC4 262 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 ATG16L1Q676U5 607 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 TXNRD3NBQ6F5E7 133 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 TAPT1Q6NXT6 567 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 ANKRD52Q8NB46 1076 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 KDM4CQ9H3R0 1056 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 NXF3Q9H4D5 531 aaKnown RBP11.21□□□□□ -0.62
CLIP1-213ENST00000540338 HMGXB4Q9UGU5 601 aa11.21□□□□□ -0.62
CLIP1-213ENST00000540338 CFAP73A6NFT4 308 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 ELK3P41970 407 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 TPI1P60174 286 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 TSPY1Q01534 308 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 KLF1Q13351 362 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-213ENST00000540338 TMEM63BQ5T3F8 832 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 LDLRAD1Q5T700 205 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 SPRYD7Q5W111 196 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 NPNTQ6UXI9 565 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 SLC7A14Q8TBB6 771 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms