RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 IQCB1Q15051 598 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 ZBTB6Q15916 424 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 NFIL3Q16649 462 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 HSP90AA4PQ58FG1 418 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 GAS2L3Q86XJ1 694 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 DHX40Q8IX18 779 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 GPD1LQ8N335 351 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 XXYLT1Q8NBI6 393 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 MDGA1Q8NFP4 955 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 USP33Q8TEY7 942 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 LRIG1Q96JA1 1093 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 CBWD1Q9BRT8 395 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 RBSNQ9H1K0 784 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 IKZF4Q9H2S9 585 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 THAP9Q9H5L6 903 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 CCDC86Q9H6F5 360 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 ECT2Q9H8V3 914 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 FSCN3Q9NQT6 498 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 TDP1Q9NUW8 608 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 FANCLQ9NW38 375 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 PILRBQ9UKJ0 227 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 AGO2Q9UKV8 859 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 MYO18AQ92614 2054 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 ANAPC1Q9H1A4 1944 aa13.34□□□□□ -0.27
CLSTN3-208ENST00000538933 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 GOLGA8IPA6NC78 632 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 GOLGA8JA6NMD2 632 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 K7EQS6 105 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 F11P03951 625 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 MCF2P10911 925 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 CHRM1P11229 460 aaPredicted RBP13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 KRT13P13646 458 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 LRPAP1P30533 357 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 RDXP35241 583 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 PSMC2P35998 433 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 P2RY2P41231 377 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 PDGFRLQ15198 375 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 KYAT1Q16773 422 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 ZCWPW2Q504Y3 356 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 ANO7Q6IWH7 933 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 SLC39A4Q6P5W5 647 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 C12orf56Q8IXR9 622 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 TMEFF1Q8IYR6 380 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 MAB21L3Q8N8X9 362 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 RDH13Q8NBN7 331 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 MDM1Q8TC05 714 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 ADAMTS14Q8WXS8 1223 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 CD101Q93033 1021 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 SAAL1Q96ER3 474 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 EEF2KMTQ96G04 330 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 ZBTB45Q96K62 511 aaPredicted RBP13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 DUSP9Q99956 384 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 KIAA1586Q9HCI6 787 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 SAMSN1Q9NSI8 373 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 ZMYM5Q9UJ78 669 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 RAXQ9Y2V3 346 aa13.33□□□□□ -0.28
CLSTN3-208ENST00000538933 KCNJ18B7U540 433 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 PES1O00541 588 aaKnown RBP13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 SLC16A3O15427 465 aaKnown RBP13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 HMGA1P17096 107 aaKnown RBP13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 TYMPP19971 482 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 KCNJ12Q14500 433 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 ZNF268Q14587 947 aaPredicted RBP13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 GSE1Q14687 1217 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 CRY1Q16526 586 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 TXNDC8Q6A555 127 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 OVOS1Q6IE37 1185 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 TMEM92Q6UXU6 159 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 LPCAT2Q7L5N7 544 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 FILIP1Q7Z7B0 1213 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 USP37Q86T82 979 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 SLC9A9Q8IVB4 645 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 FAM186BQ8IYM0 893 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 OR10T2Q8NGX3 314 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 RLN3Q8WXF3 142 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 FAM213AQ9BRX8 229 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 KIF9Q9HAQ2 790 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 CAPN10Q9HC96 672 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 MMP17Q9ULZ9 603 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 SCN1AP35498 2009 aa13.32□□□□□ -0.28
CLSTN3-208ENST00000538933 GOLGA4Q13439 2230 aaKnown RBP13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 A0A0B4J269 797 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 ZNF233A6NK53 670 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 OGTO15294 1046 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 C1QL1O75973 258 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 SERPINC1P01008 464 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 ITPKAP23677 461 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 ADSSP30520 456 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 AVPR1AP37288 418 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 TUFMP49411 452 aaKnown RBP13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 CDR1P51861 262 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 MCL1Q07820 350 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 NCAPHQ15003 741 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 SNRNP35Q16560 246 aaKnown RBP13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 EML3Q32P44 896 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 MAP7D1Q3KQU3 841 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 SEZ6Q53EL9 994 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 C2orf27AQ580R0 203 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 DCAF17Q5H9S7 520 aaPredicted RBP13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 SPDYCQ5MJ68 293 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms