RNA–Protein interactions for RNA: ENST00000536107.5

YBX3-205, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-205	ENST00000536107	PIP4K2C	Q8TBX8	421 aa		4.56	□□□□□ -1.68
YBX3-205	ENST00000536107	AUTS2	Q8WXX7	1259 aa		4.56	□□□□□ -1.68
YBX3-205	ENST00000536107	PHKB	Q93100	1093 aa		4.56	□□□□□ -1.68
YBX3-205	ENST00000536107	DDX23	Q9BUQ8	820 aa	Known RBP	4.56	□□□□□ -1.68
YBX3-205	ENST00000536107	USP44	Q9H0E7	712 aa		4.56	□□□□□ -1.68
YBX3-205	ENST00000536107	CCDC8	Q9H0W5	538 aa	Predicted RBP	4.56	□□□□□ -1.68
YBX3-205	ENST00000536107	C12orf65	Q9H3J6	166 aa	Known RBP	4.56	□□□□□ -1.68
YBX3-205	ENST00000536107	RNPEP	Q9H4A4	650 aa		4.56	□□□□□ -1.68
YBX3-205	ENST00000536107	TMEM9B	Q9NQ34	198 aa		4.56	□□□□□ -1.68
YBX3-205	ENST00000536107	DDX41	Q9UJV9	622 aa	Known RBP	4.56	□□□□□ -1.68
YBX3-205	ENST00000536107	MRVI1	Q9Y6F6	885 aa		4.56	□□□□□ -1.68
YBX3-205	ENST00000536107	NLRC5	Q86WI3	1866 aa		4.56	□□□□□ -1.68
YBX3-205	ENST00000536107	CLUH	O75153	1309 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	NRCAM	Q92823	1304 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	MCM3AP	O60318	1980 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	CCDC195	A0A1B0GUA6	201 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107		A0A1W2PQH9	124 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	DENND3	A2RUS2	1198 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	MEFV	O15553	781 aa	Predicted RBP	4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	IGSF3	O75054	1194 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	EPN2	O95208	641 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	IL18BP	O95998	194 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	CAPNS1	P04632	268 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	ENO2	P09104	434 aa	Predicted RBP	4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	UBTFL1	P0CB47	393 aa	Predicted RBP	4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	CCDC192	P0DO97	292 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	TDGF1	P13385	188 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	ABCG1	P45844	678 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	KRTAP10-7	P60409	375 aa	Predicted RBP	4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	HHEX	Q03014	270 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	EXOSC9	Q06265	439 aa	Known RBP	4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	TOP3A	Q13472	1001 aa	Predicted RBP	4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	GIT2	Q14161	759 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	TAF1B	Q53T94	588 aa	Predicted RBP	4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	FBXO47	Q5MNV8	452 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	PAPD7	Q5XG87	772 aa	Known RBP	4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	C15orf39	Q6ZRI6	1047 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	SND1	Q7KZF4	910 aa	Known RBP eCLIP	4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	ADGRE4P	Q86SQ3	457 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	RTN4RL1	Q86UN2	441 aa	Predicted RBP	4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	SGMS1	Q86VZ5	419 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	RPAP2	Q8IXW5	612 aa	Predicted RBP	4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	VPS52	Q8N1B4	723 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	RCBTB1	Q8NDN9	531 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	SLC22A17	Q8WUG5	538 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	STAG1	Q8WVM7	1258 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	SCYL1	Q96KG9	808 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	RPP25	Q9BUL9	199 aa	Known RBP	4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	LMAN1L	Q9HAT1	526 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	ATP6V0A4	Q9HBG4	840 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	WDR6	Q9NNW5	1121 aa	Known RBP	4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	NYAP2	Q9P242	653 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	CDY2A	Q9Y6F7	541 aa		4.55	□□□□□ -1.68
YBX3-205	ENST00000536107	ASXL3	Q9C0F0	2248 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	SALL3	Q9BXA9	1300 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	ANHX	E9PGG2	379 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107		M0QZ92	97 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	KRIT1	O00522	736 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	NOP56	O00567	594 aa	Known RBP	4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	RPP40	O75818	363 aa	Known RBP	4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	CAVIN2	O95810	425 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	FGFR1	P11362	822 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	GP1BB	P13224	206 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	FAH	P16930	419 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	MCC	P23508	829 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	EDNRB	P24530	442 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	SLC1A4	P43007	532 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	CSRP3	P50461	194 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	METAP2	P50579	478 aa	Known RBP eCLIP	4.54	□□□□□ -1.68	4e-9	■■■■■ 37.6
YBX3-205	ENST00000536107	RPS6	P62753	249 aa	Known RBP	4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	CREB5	Q02930	508 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	G3BP1	Q13283	466 aa	Known RBP eCLIP	4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	NOLC1	Q14978	699 aa	Known RBP eCLIP	4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	ACBD5	Q5T8D3	534 aa	Predicted RBP	4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	PARM1	Q6UWI2	310 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	C16orf86	Q6ZW13	317 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	KBTBD6	Q86V97	674 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	GPR150	Q8NGU9	434 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	CLEC4D	Q8WXI8	215 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	SMG7	Q92540	1137 aa	Known RBP	4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	MRGPRX3	Q96LB0	322 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	RIOK1	Q9BRS2	568 aa	Known RBP	4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	IER2	Q9BTL4	223 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	CWH43	Q9H720	699 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	AGO3	Q9H9G7	860 aa	Known RBP	4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	MLXIP	Q9HAP2	919 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	SLC6A20	Q9NP91	592 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	SMC4	Q9NTJ3	1288 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	GPRC5B	Q9NZH0	403 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	PADI3	Q9ULW8	664 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	HDAC5	Q9UQL6	1122 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	PCDHGA5	Q9Y5G8	931 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	FANCM	Q8IYD8	2048 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	ATG2A	Q2TAZ0	1938 aa		4.54	□□□□□ -1.68
YBX3-205	ENST00000536107	SPTAN1	Q13813	2472 aa	Known RBP	4.53	□□□□□ -1.68
YBX3-205	ENST00000536107	FAM221B	A6H8Z2	402 aa		4.53	□□□□□ -1.68
YBX3-205	ENST00000536107	NT5C1B-RDH14	C9J2C7	533 aa		4.53	□□□□□ -1.68
YBX3-205	ENST00000536107	PATL2	C9JE40	543 aa	Known RBP	4.53	□□□□□ -1.68
YBX3-205	ENST00000536107	MAN2B1	O00754	1011 aa		4.53	□□□□□ -1.68
YBX3-205	ENST00000536107	INPPL1	O15357	1258 aa		4.53	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms