RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 TRAF3IP3Q9Y228 551 aa13.92□□□□□ -0.18
RTN3-207ENST00000536011 PCDHGA5Q9Y5G8 931 aa13.92□□□□□ -0.18
RTN3-207ENST00000536011 FAM237AA0A1B0GTK4 181 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 A0A1W2PQ27 194 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 A0A1W2PQ64 194 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 A0A1W2PQD8 194 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 E2F8A0AVK6 867 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.91□□□□□ -0.18
RTN3-207ENST00000536011 AP1G2O75843 785 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 VNN1O95497 513 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 ASS1P00966 412 aaKnown RBP13.91□□□□□ -0.18
RTN3-207ENST00000536011 CYP17A1P05093 508 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 NR2F2P24468 414 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 PXNP49023 591 aaPredicted RBP13.91□□□□□ -0.18
RTN3-207ENST00000536011 VAMP7P51809 220 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 NDUFA8P51970 172 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 SLC5A3P53794 718 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 ATXN1P54253 815 aaKnown RBP13.91□□□□□ -0.18
RTN3-207ENST00000536011 DMC1Q14565 340 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 ELF2Q15723 593 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 NFIL3Q16649 462 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 PREPLQ4J6C6 727 aaPredicted RBP13.91□□□□□ -0.18
RTN3-207ENST00000536011 SNX30Q5VWJ9 437 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 SV2AQ7L0J3 742 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 ACOT1Q86TX2 421 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 C12orf50Q8NA57 414 aaPredicted RBP13.91□□□□□ -0.18
RTN3-207ENST00000536011 HHIPQ96QV1 700 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 RNF38Q9H0F5 515 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 LINC00597Q9H2U6 94 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 TMEM30AQ9NV96 361 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 EBF1Q9UH73 591 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 NCOR2Q9Y618 2525 aa13.91□□□□□ -0.18
RTN3-207ENST00000536011 MED19A0JLT2 244 aaPredicted RBP13.9□□□□□ -0.18
RTN3-207ENST00000536011 SLC30A4O14863 429 aa13.9□□□□□ -0.18
RTN3-207ENST00000536011 EPN2O95208 641 aa13.9□□□□□ -0.18
RTN3-207ENST00000536011 HLA-DRAP01903 254 aa13.9□□□□□ -0.18
RTN3-207ENST00000536011 FAM200BP0CF97 657 aa13.9□□□□□ -0.18
RTN3-207ENST00000536011 DLG4P78352 724 aa13.9□□□□□ -0.18
RTN3-207ENST00000536011 GOLGA8FQ08AF8 430 aa13.9□□□□□ -0.18
RTN3-207ENST00000536011 GOLGA8DPQ0D2H9 430 aa13.9□□□□□ -0.18
RTN3-207ENST00000536011 DHCR24Q15392 516 aa13.9□□□□□ -0.18
RTN3-207ENST00000536011 HSF5Q4G112 596 aaPredicted RBP13.9□□□□□ -0.18
RTN3-207ENST00000536011 NAIF1Q69YI7 327 aaPredicted RBP13.9□□□□□ -0.18
RTN3-207ENST00000536011 FAM186BQ8IYM0 893 aa13.9□□□□□ -0.18
RTN3-207ENST00000536011 FUKQ8N0W3 1084 aa13.9□□□□□ -0.18
RTN3-207ENST00000536011 CRYBG2Q8N1P7 616 aa13.9□□□□□ -0.18
RTN3-207ENST00000536011 GUF1Q8N442 669 aaKnown RBP13.9□□□□□ -0.18
RTN3-207ENST00000536011 TSTD1Q8NFU3 115 aa13.9□□□□□ -0.18
RTN3-207ENST00000536011 SLC2A14Q8TDB8 520 aa13.9□□□□□ -0.18
RTN3-207ENST00000536011 DDX1Q92499 740 aaKnown RBP13.9□□□□□ -0.18
RTN3-207ENST00000536011 KCNK16Q96T55 309 aa13.9□□□□□ -0.18
RTN3-207ENST00000536011 PNKPQ96T60 521 aa13.9□□□□□ -0.18
RTN3-207ENST00000536011 DUSP9Q99956 384 aaKnown RBP13.9□□□□□ -0.18
RTN3-207ENST00000536011 CYP3A43Q9HB55 503 aa13.9□□□□□ -0.18
RTN3-207ENST00000536011 TLR8Q9NR97 1041 aaKnown RBP13.9□□□□□ -0.18
RTN3-207ENST00000536011 SH3BP1Q9Y3L3 701 aa13.9□□□□□ -0.18
RTN3-207ENST00000536011 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.9□□□□□ -0.18
RTN3-207ENST00000536011 SPAG17Q6Q759 2223 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.89□□□□□ -0.19
RTN3-207ENST00000536011 FAM92AA1XBS5 289 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 TNFRSF10BO14763 440 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 COCHO43405 550 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 STX10O60499 249 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 ALDH1A2O94788 518 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 RHOBTB1O94844 696 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 APODP05090 189 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 ADH5P11766 374 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 PSMC2P35998 433 aaKnown RBP13.89□□□□□ -0.19
RTN3-207ENST00000536011 OPRD1P41143 372 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 ASPAP45381 313 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 DGKEP52429 567 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 NDST1P52848 882 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 MRPS21P82921 87 aaKnown RBP13.89□□□□□ -0.19
RTN3-207ENST00000536011 ZXDBP98169 803 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 INCA1Q0VD86 236 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 DPYDQ12882 1025 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 AASDHQ4L235 1098 aaPredicted RBP13.89□□□□□ -0.19
RTN3-207ENST00000536011 BTBD8Q5XKL5 378 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 KRBA2Q6ZNG9 492 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 NUDT18Q6ZVK8 323 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 KBTBD6Q86V97 674 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 ADGRG2Q8IZP9 1017 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 TTC39CQ8N584 583 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 SCAMP5Q8TAC9 235 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 USP33Q8TEY7 942 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 ZC3H10Q96K80 434 aaKnown RBP13.89□□□□□ -0.19
RTN3-207ENST00000536011 NT5C1AQ9BXI3 368 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 SDCBP2Q9H190 292 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 CSNK1G1Q9HCP0 422 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 IL37Q9NZH6 218 aa13.89□□□□□ -0.19
RTN3-207ENST00000536011 ZDHHC11BP0C7U3 371 aa13.88□□□□□ -0.19
RTN3-207ENST00000536011 CCDC130P13994 396 aa13.88□□□□□ -0.19
RTN3-207ENST00000536011 GTF2H1P32780 548 aa13.88□□□□□ -0.19
RTN3-207ENST00000536011 GRIA2P42262 883 aa13.88□□□□□ -0.19
RTN3-207ENST00000536011 SEC13P55735 322 aa13.88□□□□□ -0.19
RTN3-207ENST00000536011 GAD2Q05329 585 aa13.88□□□□□ -0.19
RTN3-207ENST00000536011 EDRF1Q3B7T1 1238 aa13.88□□□□□ -0.19
RTN3-207ENST00000536011 USP39Q53GS9 565 aaKnown RBP13.88□□□□□ -0.19
RTN3-207ENST00000536011 C2orf27AQ580R0 203 aa13.88□□□□□ -0.19
RTN3-207ENST00000536011 PAQR9Q6ZVX9 377 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms