RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, human

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP48-215	ENST00000534705	KLK15	Q9H2R5	256 aa		4.28	□□□□□ -1.72
USP48-215	ENST00000534705	SMURF2	Q9HAU4	748 aa		4.28	□□□□□ -1.72
USP48-215	ENST00000534705	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	4.28	□□□□□ -1.72
USP48-215	ENST00000534705	IFT172	Q9UG01	1749 aa		4.28	□□□□□ -1.72
USP48-215	ENST00000534705	CHD2	O14647	1828 aa	Known RBP	4.28	□□□□□ -1.72
USP48-215	ENST00000534705	KIF15	Q9NS87	1388 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	A2ML1	A8K2U0	1454 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	ERVK-7	P63135	1459 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	MBD3L4	A6NDZ8	208 aa	Predicted RBP	4.27	□□□□□ -1.73
USP48-215	ENST00000534705	MBD3L3	A6NE82	208 aa	Predicted RBP	4.27	□□□□□ -1.73
USP48-215	ENST00000534705		A6NNZ2	444 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	VSTM5	A8MXK1	200 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	VWC2L	B2RUY7	222 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	MYO1C	O00159	1063 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	BTN3A1	O00481	513 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	TBX3	O15119	743 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	SLC16A3	O15427	465 aa	Known RBP	4.27	□□□□□ -1.73
USP48-215	ENST00000534705	SLC7A1	P30825	629 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	LILRA4	P59901	499 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	BMPR2	Q13873	1038 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	POLD3	Q15054	466 aa	Predicted RBP	4.27	□□□□□ -1.73
USP48-215	ENST00000534705	TSHZ1	Q6ZSZ6	1077 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	DNAJC5G	Q8N7S2	189 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	TTC8	Q8TAM2	541 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	FBXO41	Q8TF61	875 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	ZNF518B	Q9C0D4	1074 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	OBP2A	Q9NY56	170 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	ARPP21	Q9UBL0	812 aa	Predicted RBP	4.27	□□□□□ -1.73
USP48-215	ENST00000534705	TMEM131L	A2VDJ0	1609 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	LTBP4	Q8N2S1	1624 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	ARHGAP31	Q2M1Z3	1444 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	UHRF1BP1	Q6BDS2	1440 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	UGGT1	Q9NYU2	1555 aa		4.27	□□□□□ -1.73
USP48-215	ENST00000534705	SETD1A	O15047	1707 aa	Known RBP	4.26	□□□□□ -1.73
USP48-215	ENST00000534705	PLA2R1	Q13018	1463 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	CFAP69	A5D8W1	941 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	TRIM43B	A6NCK2	446 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	GOLIM4	O00461	696 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	TPP1	O14773	563 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	KIF3B	O15066	747 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	RHO	P08100	348 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	TSPY4	P0CV99	314 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	TSPY10	P0CW01	314 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	MYB	P10242	640 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	KIT	P10721	976 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	ZFX	P17010	805 aa	Predicted RBP	4.26	□□□□□ -1.73
USP48-215	ENST00000534705	RPL17	P18621	184 aa	Known RBP	4.26	□□□□□ -1.73
USP48-215	ENST00000534705	KLRC1	P26715	233 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	HSPA2	P54652	639 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	SLC13A2	Q13183	592 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	E2F2	Q14209	437 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	TBCC	Q15814	346 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	MGAT5B	Q3V5L5	792 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	AKNAD1	Q5T1N1	836 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	GGT6	Q6P531	493 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	DARS2	Q6PI48	645 aa	Known RBP	4.26	□□□□□ -1.73
USP48-215	ENST00000534705	ZNF551	Q7Z340	670 aa	Predicted RBP	4.26	□□□□□ -1.73
USP48-215	ENST00000534705	LRTOMT	Q8WZ04	291 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	TSR2	Q969E8	191 aa	Known RBP	4.26	□□□□□ -1.73
USP48-215	ENST00000534705	TRIM43	Q96BQ3	446 aa	Predicted RBP	4.26	□□□□□ -1.73
USP48-215	ENST00000534705	NMD3	Q96D46	503 aa	Known RBP	4.26	□□□□□ -1.73
USP48-215	ENST00000534705	LRRC27	Q9C0I9	530 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	SERHL	Q9NQF3	203 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	SERTAD4	Q9NUC0	356 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	AFF4	Q9UHB7	1163 aa	Known RBP	4.26	□□□□□ -1.73
USP48-215	ENST00000534705	DDX20	Q9UHI6	824 aa	Known RBP	4.26	□□□□□ -1.73
USP48-215	ENST00000534705	PPL	O60437	1756 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	ROCK1	Q13464	1354 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	ANKRD30A	Q9BXX3	1397 aa		4.26	□□□□□ -1.73
USP48-215	ENST00000534705	CLSPN	Q9HAW4	1339 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	NLRP1	Q9C000	1473 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	LINC00473	A8K010	186 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	TBC1D4	O60343	1298 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	TTLL1	O95922	423 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	BMP15	O95972	392 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	ATF3	P18847	181 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	ITPKB	P27987	946 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	PTGER1	P34995	402 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	PDE6C	P51160	858 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	DGKE	P52429	567 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	MYO1E	Q12965	1108 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	CTBP1	Q13363	440 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	GRM3	Q14832	879 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	EZH2	Q15910	746 aa	Known RBP	4.25	□□□□□ -1.73
USP48-215	ENST00000534705	SRSF7	Q16629	238 aa	Known RBP eCLIP	4.25	□□□□□ -1.73
USP48-215	ENST00000534705	ARHGAP40	Q5TG30	622 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	RNF220	Q5VTB9	566 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	RGS7BP	Q6MZT1	257 aa	Predicted RBP	4.25	□□□□□ -1.73
USP48-215	ENST00000534705	ANKRD16	Q6P6B7	361 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	WDR53	Q7Z5U6	358 aa	Predicted RBP	4.25	□□□□□ -1.73
USP48-215	ENST00000534705	DGKH	Q86XP1	1220 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	FMNL3	Q8IVF7	1028 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	4.25	□□□□□ -1.73
USP48-215	ENST00000534705	SLC15A4	Q8N697	577 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	ATG4A	Q8WYN0	398 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	MAML1	Q92585	1016 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	APIP	Q96GX9	242 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	MSLNL	Q96KJ4	702 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	KRTAP2-2	Q9BYT5	123 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	BTBD1	Q9H0C5	482 aa		4.25	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms