RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 TRPC3Q13507 836 aa14.8□□□□□ -0.04
USP48-213ENST00000529637 TRIM72Q6ZMU5 477 aa14.8□□□□□ -0.04
USP48-213ENST00000529637 FEZF2Q8TBJ5 459 aa14.8□□□□□ -0.04
USP48-213ENST00000529637 USP6NLQ92738 828 aa14.8□□□□□ -0.04
USP48-213ENST00000529637 MPP4Q96JB8 637 aa14.8□□□□□ -0.04
USP48-213ENST00000529637 SENP7Q9BQF6 1050 aa14.8□□□□□ -0.04
USP48-213ENST00000529637 MTMR12Q9C0I1 747 aa14.8□□□□□ -0.04
USP48-213ENST00000529637 CAPN14A8MX76 684 aa14.8□□□□□ -0.04
USP48-213ENST00000529637 PSTPIP1O43586 416 aa14.8□□□□□ -0.04
USP48-213ENST00000529637 VAV1P15498 845 aa14.8□□□□□ -0.04
USP48-213ENST00000529637 ACO1P21399 889 aaKnown RBP14.8□□□□□ -0.04
USP48-213ENST00000529637 TNFSF9P41273 254 aa14.8□□□□□ -0.04
USP48-213ENST00000529637 DLG1Q12959 904 aa14.8□□□□□ -0.04
USP48-213ENST00000529637 CYP4A22Q5TCH4 519 aa14.8□□□□□ -0.04
USP48-213ENST00000529637 MFSD7Q6UXD7 560 aa14.8□□□□□ -0.04
USP48-213ENST00000529637 C15orf39Q6ZRI6 1047 aa14.8□□□□□ -0.04
USP48-213ENST00000529637 CDR2LQ86X02 465 aaPredicted RBP14.8□□□□□ -0.04
USP48-213ENST00000529637 NCAPG2Q86XI2 1143 aa14.8□□□□□ -0.04
USP48-213ENST00000529637 PPARGC1AQ9UBK2 798 aaKnown RBP14.8□□□□□ -0.04
USP48-213ENST00000529637 NXF1Q9UBU9 619 aaKnown RBP14.8□□□□□ -0.04
USP48-213ENST00000529637 ZNF646O15015 1829 aaPredicted RBP14.8□□□□□ -0.04
USP48-213ENST00000529637 F8VP50 259 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 PDLIM1O00151 329 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 LPXNO60711 386 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 FAM163BP0C2L3 166 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 FAM200BP0CF97 657 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 ETV4P43268 484 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 MSLNQ13421 630 aaPredicted RBP14.79□□□□□ -0.04
USP48-213ENST00000529637 ANGEL2Q5VTE6 544 aaKnown RBP14.79□□□□□ -0.04
USP48-213ENST00000529637 TXNRD3NBQ6F5E7 133 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 ADGRD1Q6QNK2 874 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 CDHR3Q6ZTQ4 885 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 CENPUQ71F23 418 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.79□□□□□ -0.04
USP48-213ENST00000529637 DPH6Q7L8W6 267 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 SDCCAG8Q86SQ7 713 aaPredicted RBP14.79□□□□□ -0.04
USP48-213ENST00000529637 RASSF3Q86WH2 238 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 TMPRSS6Q8IU80 811 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 ALLCQ8N6M5 410 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 DCAKDQ8WVC6 231 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 PPP2R3CQ969Q6 453 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 PDLIM7Q9NR12 457 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 AGTPBP1Q9UPW5 1226 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 IVNS1ABPQ9Y6Y0 642 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 TCRBV7S3A2A0A539 114 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 F8W8V4 182 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 SGK1O00141 431 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 MAGEC1O60732 1142 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 LDHAP00338 332 aaKnown RBP14.79□□□□□ -0.04
USP48-213ENST00000529637 CST3P01034 146 aaPredicted RBP14.79□□□□□ -0.04
USP48-213ENST00000529637 KRT19P08727 400 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 PABPC4LP0CB38 370 aaKnown RBP14.79□□□□□ -0.04
USP48-213ENST00000529637 TBXAS1P24557 533 aaPredicted RBP14.79□□□□□ -0.04
USP48-213ENST00000529637 AP2B1P63010 937 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 DALRD3Q5D0E6 543 aaKnown RBP14.79□□□□□ -0.04
USP48-213ENST00000529637 SYCP2LQ5T4T6 812 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 DEFB132Q7Z7B7 95 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 PORCNQ9H237 461 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 IP6K2Q9UHH9 426 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 DOCK5Q9H7D0 1870 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 MYH9P35579 1960 aaKnown RBP14.79□□□□□ -0.04
USP48-213ENST00000529637 SPATA31C2B4DYI2 1134 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 TM7SF2O76062 418 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 ZBTB7AO95365 584 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 ASLP04424 464 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 NAMPTP43490 491 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 AQP4P55087 323 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 MYL6P60660 151 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.79□□□□□ -0.04
USP48-213ENST00000529637 OLFML2BQ68BL8 750 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 NET1Q7Z628 596 aaPredicted RBP14.79□□□□□ -0.04
USP48-213ENST00000529637 RHPN2Q8IUC4 686 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 THNSL1Q8IYQ7 743 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 ST13P4Q8IZP2 240 aaPredicted RBP14.79□□□□□ -0.04
USP48-213ENST00000529637 PYROXD1Q8WU10 500 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 MTBPQ96DY7 904 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 CGRRF1Q99675 332 aa14.79□□□□□ -0.04
USP48-213ENST00000529637 TTLL13PA6NNM8 815 aa14.78□□□□□ -0.04
USP48-213ENST00000529637 HIRAP54198 1017 aaPredicted RBP14.78□□□□□ -0.04
USP48-213ENST00000529637 GDF10P55107 478 aa14.78□□□□□ -0.04
USP48-213ENST00000529637 PDE1BQ01064 536 aa14.78□□□□□ -0.04
USP48-213ENST00000529637 HIF1AQ16665 826 aa14.78□□□□□ -0.04
USP48-213ENST00000529637 SMTNL2Q2TAL5 461 aa14.78□□□□□ -0.04
USP48-213ENST00000529637 LCA5Q86VQ0 697 aa14.78□□□□□ -0.04
USP48-213ENST00000529637 OR6Y1Q8NGX8 325 aa14.78□□□□□ -0.04
USP48-213ENST00000529637 EXD1Q8NHP7 514 aa14.78□□□□□ -0.04
USP48-213ENST00000529637 ADAMTS6Q9UKP5 1117 aa14.78□□□□□ -0.04
USP48-213ENST00000529637 TM9SF1O15321 606 aa14.78□□□□□ -0.04
USP48-213ENST00000529637 NRLP54845 237 aa14.78□□□□□ -0.04
USP48-213ENST00000529637 ALDH18A1P54886 795 aaKnown RBP14.78□□□□□ -0.04
USP48-213ENST00000529637 TMEM62Q0P6H9 643 aa14.78□□□□□ -0.04
USP48-213ENST00000529637 UBAP2LQ14157 1087 aaKnown RBP14.78□□□□□ -0.04
USP48-213ENST00000529637 MORF4L2Q15014 288 aa14.78□□□□□ -0.04
USP48-213ENST00000529637 GPAT2Q6NUI2 795 aa14.78□□□□□ -0.04
USP48-213ENST00000529637 PDSS2Q86YH6 399 aa14.78□□□□□ -0.04
USP48-213ENST00000529637 KATNAL2Q8IYT4 538 aa14.78□□□□□ -0.04
USP48-213ENST00000529637 FBXO36Q8NEA4 188 aa14.78□□□□□ -0.04
USP48-213ENST00000529637 FOXP3Q9BZS1 431 aa14.78□□□□□ -0.04
USP48-213ENST00000529637 SSU72Q9NP77 194 aaKnown RBP14.78□□□□□ -0.04
USP48-213ENST00000529637 CHMP2BQ9UQN3 213 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms