RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 KDM5CP41229 1560 aa5.4□□□□□ -1.55
CD44-220ENST00000525688 SAMD9LQ8IVG5 1584 aa5.4□□□□□ -1.55
CD44-220ENST00000525688 SUPT6HQ7KZ85 1726 aaKnown RBP5.4□□□□□ -1.55
CD44-220ENST00000525688 YEATS2Q9ULM3 1422 aa5.4□□□□□ -1.55
CD44-220ENST00000525688 TRAPPC8Q9Y2L5 1435 aa5.4□□□□□ -1.55
CD44-220ENST00000525688 MLH3Q9UHC1 1453 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 ZFYVE16Q7Z3T8 1539 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 ARHGEF40Q8TER5 1519 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 PRAMEF33A0A0G2JMD5 474 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 ACKR2O00590 384 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 RRP9O43818 475 aaKnown RBP5.39□□□□□ -1.55
CD44-220ENST00000525688 PRAMEF10O60809 474 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 GPANK1O95872 356 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 ELANEP08246 267 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 KCNA3P22001 575 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 ATICP31939 592 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 LILRA4P59901 499 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 HSD11B2P80365 405 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 ZBED6P86452 979 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 DYRK1AQ13627 763 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 HLXQ14774 488 aaPredicted RBP5.39□□□□□ -1.55
CD44-220ENST00000525688 SLC5A9Q2M3M2 681 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 PDCD4Q53EL6 469 aaKnown RBP5.39□□□□□ -1.55
CD44-220ENST00000525688 TANGO2Q6ICL3 276 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 FOXR2Q6PJQ5 311 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 CRTC1Q6UUV9 634 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 LAYNQ6UX15 382 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 SLC30A10Q6XR72 485 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 RSRC2Q7L4I2 434 aaKnown RBP5.39□□□□□ -1.55
CD44-220ENST00000525688 GDF7Q7Z4P5 450 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 CLNKQ7Z7G1 428 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 OR8H2Q8N162 312 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 NKAIN3Q8N8D7 197 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 ATG16L2Q8NAA4 619 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 TBC1D20Q96BZ9 403 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 WWC2-AS2Q96NR7 200 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 MYCBPQ99417 103 aaPredicted RBP5.39□□□□□ -1.55
CD44-220ENST00000525688 PTDSS2Q9BVG9 487 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 SLC46A2Q9BY10 475 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 SEZ6LQ9BYH1 1024 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 SMOC2Q9H3U7 446 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 ZCCHC4Q9H5U6 513 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 ZBTB26Q9HCK0 441 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 CD248Q9HCU0 757 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 PARD6AQ9NPB6 346 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 RNF181Q9P0P0 153 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 GRHPRQ9UBQ7 328 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 KCNE5Q9UJ90 142 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 CA14Q9ULX7 337 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 AATKQ6ZMQ8 1374 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 PLEKHH2Q8IVE3 1493 aa5.39□□□□□ -1.55
CD44-220ENST00000525688 ITSN2Q9NZM3 1697 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 GAGE12BA1L429 117 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 GAGE12HA6NDE8 117 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 OR2W5A6NFC9 320 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 MARCH11A6NNE9 402 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 AHRRA9YTQ3 701 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 J3KRW8 73 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 RECQL4O94761 1208 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 ITGB3P05106 788 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 CFIP05156 583 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 HLA-DOAP06340 250 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 DHRS4L1P0CG22 281 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 CHRM3P20309 590 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 ITGALP20701 1170 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 PPIFP30405 207 aaKnown RBP5.38□□□□□ -1.55
CD44-220ENST00000525688 SLC5A2P31639 672 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 HIBADHP31937 336 aaKnown RBP5.38□□□□□ -1.55
CD44-220ENST00000525688 TSPAN7P41732 249 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 ITGA8P53708 1063 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 ARL4CP56559 192 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 MYO1EQ12965 1108 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 RRP1BQ14684 758 aaKnown RBP5.38□□□□□ -1.55
CD44-220ENST00000525688 TRIM71Q2Q1W2 868 aaKnown RBP5.38□□□□□ -1.55
CD44-220ENST00000525688 HS1BP3Q53T59 392 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 EEF1AKMT2Q5JPI9 291 aaKnown RBP5.38□□□□□ -1.55
CD44-220ENST00000525688 MRNIPQ6NTE8 343 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 TMEM108Q6UXF1 575 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.38□□□□□ -1.55
CD44-220ENST00000525688 C1orf122Q6ZSJ8 110 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 USP49Q70CQ1 688 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 CCDC28AQ8IWP9 274 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 TMEM132CQ8N3T6 1108 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 STT3BQ8TCJ2 826 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 BPIFB1Q8TDL5 484 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 GCC1Q96CN9 775 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 BOD1Q96IK1 185 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 CDHR1Q96JP9 859 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 FAM227BQ96M60 508 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 OSBPL9Q96SU4 736 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 ZSWIM1Q9BR11 485 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 TRIM5Q9C035 493 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 PCDHAC1Q9H158 963 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 TMEM74BQ9NUR3 256 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 EIF2B4Q9UI10 523 aaKnown RBP5.38□□□□□ -1.55
CD44-220ENST00000525688 ZMYND8Q9ULU4 1186 aaPredicted RBP5.38□□□□□ -1.55
CD44-220ENST00000525688 FPGT-TNNI3KV9GXZ4 949 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 ZNF644Q9H582 1327 aaPredicted RBP5.38□□□□□ -1.55
CD44-220ENST00000525688 MBD5Q9P267 1494 aa5.38□□□□□ -1.55
CD44-220ENST00000525688 SYCP2Q9BX26 1530 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms