RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 KAT2BQ92831 832 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 SLCO1B3Q9NPD5 702 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 PAPOLBQ9NRJ5 636 aaKnown RBP12.13□□□□□ -0.47
SYNPO-204ENST00000519664 COG5Q9UP83 839 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 MTO1Q9Y2Z2 717 aaKnown RBP12.13□□□□□ -0.47
SYNPO-204ENST00000519664 TTC36A6NLP5 189 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 SNX2O60749 519 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 SEC24DO94855 1032 aaPredicted RBP12.13□□□□□ -0.47
SYNPO-204ENST00000519664 RRP1BQ14684 758 aaKnown RBP12.13□□□□□ -0.47
SYNPO-204ENST00000519664 HYIQ5T013 277 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 DUPD1Q68J44 220 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 LRRC8EQ6NSJ5 796 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 MTHFD1LQ6UB35 978 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 ANGPTL8Q6UXH0 198 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 BRSK2Q8IWQ3 736 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 C3orf20Q8ND61 904 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.13□□□□□ -0.47
SYNPO-204ENST00000519664 PGM2Q96G03 612 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 SPON1Q9HCB6 807 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 KRT82Q9NSB4 513 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 ABI2Q9NYB9 513 aaPredicted RBP12.13□□□□□ -0.47
SYNPO-204ENST00000519664 COL20A1Q9P218 1284 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 E5RI56 91 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 CES2O00748 559 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 B4GALT5O43286 388 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 MAP3K7CLP57077 242 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 CRADDP78560 199 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 TMEM132BQ14DG7 1078 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 CELF6Q96J87 481 aaKnown RBP12.13□□□□□ -0.47
SYNPO-204ENST00000519664 WDR70Q9NW82 654 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 DLGAP2Q9P1A6 1054 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 HIRAP54198 1017 aaPredicted RBP12.13□□□□□ -0.47
SYNPO-204ENST00000519664 FRA10AC1Q70Z53 315 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 ZNF518BQ9C0D4 1074 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 PORCNQ9H237 461 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 WDCPQ9H6R7 721 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 PCDH9Q9HC56 1237 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 AJAP1Q9UKB5 411 aaPredicted RBP12.13□□□□□ -0.47
SYNPO-204ENST00000519664 UBQLN1Q9UMX0 589 aaKnown RBP12.13□□□□□ -0.47
SYNPO-204ENST00000519664 R3HDM2Q9Y2K5 976 aaKnown RBP12.13□□□□□ -0.47
SYNPO-204ENST00000519664 AGPSO00116 658 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 HNRNPCP07910 306 aaKnown RBP eCLIP12.12□□□□□ -0.47
SYNPO-204ENST00000519664 HSPA8P11142 646 aaKnown RBP12.12□□□□□ -0.47
SYNPO-204ENST00000519664 SERPINB9P50453 376 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 HUNKP57058 714 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 ZBTB41Q5SVQ8 909 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 REPS2Q8NFH8 660 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 TEKT4Q8WW24 435 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 ASCC2Q9H1I8 757 aaPredicted RBP12.12□□□□□ -0.47
SYNPO-204ENST00000519664 CHST12Q9NRB3 414 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 IRF6O14896 467 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 SPAG6O75602 509 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 RBL1P28749 1068 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 FAAP100Q0VG06 881 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 MMRN1Q13201 1228 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 NIPA1Q7RTP0 329 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 SLC26A11Q86WA9 606 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 NUP93Q8N1F7 819 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 NCLNQ969V3 563 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 EGFL8Q99944 293 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 ATXN3LQ9H3M9 355 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 TJP2Q9UDY2 1190 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 AFDNP55196 1824 aaKnown RBP12.12□□□□□ -0.47
SYNPO-204ENST00000519664 hCG_2014768A0A024R1R8 64 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 YDJCA8MPS7 323 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 ACKR2O00590 384 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 CYB561D2O14569 222 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 OPLAHO14841 1288 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 CYP2F1P24903 491 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 RPA3P35244 121 aaPredicted RBP12.12□□□□□ -0.47
SYNPO-204ENST00000519664 OR1G1P47890 313 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 ZNF157P51786 506 aaPredicted RBP12.12□□□□□ -0.47
SYNPO-204ENST00000519664 QPCTQ16769 361 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 ZACNQ401N2 412 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 EEF1DP3Q658K8 133 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 MAP1SQ66K74 1059 aaPredicted RBP12.12□□□□□ -0.47
SYNPO-204ENST00000519664 TMEM154Q6P9G4 183 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 POU5F2Q8N7G0 328 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 SLC16A10Q8TF71 515 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 MAGEB5Q9BZ81 275 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 CYP4F12Q9HCS2 524 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 NUDT5Q9UKK9 219 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 MYH10P35580 1976 aa12.12□□□□□ -0.47
SYNPO-204ENST00000519664 GAS2O43903 313 aaKnown RBP12.11□□□□□ -0.47
SYNPO-204ENST00000519664 TPST1O60507 370 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 MICAL2O94851 1124 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 LSM8O95777 96 aaKnown RBP12.11□□□□□ -0.47
SYNPO-204ENST00000519664 KCNA4P22459 653 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 ITIH4Q14624 930 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 EML3Q32P44 896 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 ACCSLQ4AC99 568 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 EXOC3L1Q86VI1 746 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 BSNDQ8WZ55 320 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 OPTNQ96CV9 577 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 TSPYL2Q9H2G4 693 aaPredicted RBP12.11□□□□□ -0.47
SYNPO-204ENST00000519664 XAB2Q9HCS7 855 aaKnown RBP12.11□□□□□ -0.47
SYNPO-204ENST00000519664 ARHGEF38Q9NXL2 777 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 TADA2AO75478 443 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 HMGCRP04035 888 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 ZCCHC18P0CG32 403 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms