RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 OSGEPQ9NPF4 335 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 GTF3C4Q9UKN8 822 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 MAP3K6O95382 1288 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 VAV1P15498 845 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 PTPRAP18433 802 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 KRT4P19013 534 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 PRAMEP78395 509 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 LRRC8BQ6P9F7 803 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 NANOGNBQ7Z5D8 188 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 SPATA18Q8TC71 538 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 RRAGCQ9HB90 399 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 SETD4Q9NVD3 440 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 KNDC1Q76NI1 1749 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 TISP43B9A030 160 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 EEF2KO00418 725 aaKnown RBP13.62□□□□□ -0.23
TCOF1-213ENST00000514442 GARTP22102 1010 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 FLT3P36888 993 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 MYL6P60660 151 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 CBX3Q13185 183 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 C16orf72Q14CZ0 275 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 RASA2Q15283 850 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 EFHC1Q5JVL4 640 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 GDPD5Q8WTR4 605 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 JADE3Q92613 823 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 OSMRQ99650 979 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 WARS2Q9UGM6 360 aaKnown RBP13.62□□□□□ -0.23
TCOF1-213ENST00000514442 XPO7Q9UIA9 1087 aaKnown RBP13.62□□□□□ -0.23
TCOF1-213ENST00000514442 PEAK1Q9H792 1746 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 LGR5O75473 907 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 CXCL8P10145 99 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 MYL2P10916 166 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 TAC1P20366 129 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 NEK2P51955 445 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 OCRLQ01968 901 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 VGLL4Q14135 290 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 MGAT5BQ3V5L5 792 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 MFSD4BQ5TF39 518 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 DNERQ8NFT8 737 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 RMDN1Q96DB5 314 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 MTMR9Q96QG7 549 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 CGRRF1Q99675 332 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 PIDD1Q9HB75 910 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 LMCD1Q9NZU5 365 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 CIDEBQ9UHD4 219 aa13.62□□□□□ -0.23
TCOF1-213ENST00000514442 UBA6A0AVT1 1052 aaPredicted RBP13.61□□□□□ -0.23
TCOF1-213ENST00000514442 DPYSL4O14531 572 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 PYGBP11216 843 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 HDAC4P56524 1084 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 IL1RL1Q01638 556 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 KCNA1Q09470 495 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 TMTC4Q5T4D3 741 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 SV2AQ7L0J3 742 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 AGR3Q8TD06 166 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 ATG4AQ8WYN0 398 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 EME1Q96AY2 570 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 TLCD1Q96CP7 247 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 MRPL1Q9BYD6 325 aaKnown RBP13.61□□□□□ -0.23
TCOF1-213ENST00000514442 TRIM15Q9C019 465 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 CLIC5Q9NZA1 410 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 HACD3Q9P035 362 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 LINGO3P0C6S8 592 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 CCDC166P0CW27 439 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 HSPA8P11142 646 aaKnown RBP13.61□□□□□ -0.23
TCOF1-213ENST00000514442 INSRRP14616 1297 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 TYK2P29597 1187 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 EIF2B2P49770 351 aaKnown RBP13.61□□□□□ -0.23
TCOF1-213ENST00000514442 CENPCQ03188 943 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 C11orf91Q3C1V1 193 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 DCAF4L1Q3SXM0 396 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 KCNT1Q5JUK3 1230 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 GPR141Q7Z602 305 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 STKLD1Q8NE28 680 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 CMTM5Q96DZ9 223 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 ECSITQ9BQ95 431 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 MARCOQ9UEW3 520 aaPredicted RBP13.61□□□□□ -0.23
TCOF1-213ENST00000514442 UBQLN1Q9UMX0 589 aaKnown RBP13.61□□□□□ -0.23
TCOF1-213ENST00000514442 CHN2P52757 468 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 GEMIN4P57678 1058 aaKnown RBP13.61□□□□□ -0.23
TCOF1-213ENST00000514442 FRA10AC1Q70Z53 315 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 NT5DC3Q86UY8 548 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 CCDC33Q8N5R6 958 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 SAMD3Q8N6K7 520 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 ARL10Q8N8L6 244 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 CDCA5Q96FF9 252 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.61□□□□□ -0.23
TCOF1-213ENST00000514442 ATP11BQ9Y2G3 1177 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 IRF1P10914 325 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 MTTPP55157 894 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 MIIPQ5JXC2 388 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 ARHGEF26Q96DR7 871 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 PABPC5Q96DU9 382 aaKnown RBP13.61□□□□□ -0.23
TCOF1-213ENST00000514442 GLT1D1Q96MS3 346 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 CACYBPQ9HB71 228 aaKnown RBP13.61□□□□□ -0.23
TCOF1-213ENST00000514442 R3HDM2Q9Y2K5 976 aaKnown RBP13.61□□□□□ -0.23
TCOF1-213ENST00000514442 SLIT3O75094 1523 aa13.61□□□□□ -0.23
TCOF1-213ENST00000514442 H3BRB1 525 aa13.6□□□□□ -0.23
TCOF1-213ENST00000514442 TNFAIP8O95379 198 aa13.6□□□□□ -0.23
TCOF1-213ENST00000514442 NCAM1P13591 858 aa13.6□□□□□ -0.23
TCOF1-213ENST00000514442 COPAP53621 1224 aa13.6□□□□□ -0.23
TCOF1-213ENST00000514442 USP46P62068 366 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms