RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 SNUPNO95149 360 aaKnown RBP3.59□□□□□ -1.83
NUP54-208ENST00000508604 MTHFSP49914 203 aa3.59□□□□□ -1.83
NUP54-208ENST00000508604 NKX6-1P78426 367 aaPredicted RBP3.59□□□□□ -1.83
NUP54-208ENST00000508604 HSF1Q00613 529 aa3.59□□□□□ -1.83
NUP54-208ENST00000508604 PSG6Q00889 435 aa3.59□□□□□ -1.83
NUP54-208ENST00000508604 RHDQ02161 417 aa3.59□□□□□ -1.83
NUP54-208ENST00000508604 LMAN2Q12907 356 aa3.59□□□□□ -1.83
NUP54-208ENST00000508604 ZNF750Q32MQ0 723 aa3.59□□□□□ -1.83
NUP54-208ENST00000508604 CERCAMQ5T4B2 595 aa3.59□□□□□ -1.83
NUP54-208ENST00000508604 GIMAP6Q6P9H5 292 aa3.59□□□□□ -1.83
NUP54-208ENST00000508604 ZNF280BQ86YH2 543 aa3.59□□□□□ -1.83
NUP54-208ENST00000508604 MESP1Q9BRJ9 268 aa3.59□□□□□ -1.83
NUP54-208ENST00000508604 ZPBPQ9BS86 351 aa3.59□□□□□ -1.83
NUP54-208ENST00000508604 SYF2O95926 243 aaKnown RBP3.59□□□□□ -1.84
NUP54-208ENST00000508604 KCNA3P22001 575 aa3.59□□□□□ -1.84
NUP54-208ENST00000508604 SLC11A2P49281 568 aa3.59□□□□□ -1.84
NUP54-208ENST00000508604 STIM1Q13586 685 aa3.59□□□□□ -1.84
NUP54-208ENST00000508604 CCNIQ14094 377 aa3.59□□□□□ -1.84
NUP54-208ENST00000508604 KCNB1Q14721 858 aa3.59□□□□□ -1.84
NUP54-208ENST00000508604 MMP21Q8N119 569 aa3.59□□□□□ -1.84
NUP54-208ENST00000508604 PPP2R3CQ969Q6 453 aa3.59□□□□□ -1.84
NUP54-208ENST00000508604 NLRP4Q96MN2 994 aa3.59□□□□□ -1.84
NUP54-208ENST00000508604 SLCO5A1Q9H2Y9 848 aa3.59□□□□□ -1.84
NUP54-208ENST00000508604 MLXIPQ9HAP2 919 aa3.59□□□□□ -1.84
NUP54-208ENST00000508604 SPC25Q9HBM1 224 aa3.59□□□□□ -1.84
NUP54-208ENST00000508604 SPEF1Q9Y4P9 236 aa3.59□□□□□ -1.84
NUP54-208ENST00000508604 TMPRSS11DO60235 418 aa3.58□□□□□ -1.84
NUP54-208ENST00000508604 ZRANB2O95218 330 aaKnown RBP eCLIP3.58□□□□□ -1.84
NUP54-208ENST00000508604 CD63P08962 238 aa3.58□□□□□ -1.84
NUP54-208ENST00000508604 POU2F2P09086 479 aa3.58□□□□□ -1.84
NUP54-208ENST00000508604 TACR3P29371 465 aa3.58□□□□□ -1.84
NUP54-208ENST00000508604 CPA2P48052 419 aa3.58□□□□□ -1.84
NUP54-208ENST00000508604 CFHR1Q03591 330 aa3.58□□□□□ -1.84
NUP54-208ENST00000508604 AWAT1Q58HT5 328 aa3.58□□□□□ -1.84
NUP54-208ENST00000508604 MANEAQ5SRI9 462 aa3.58□□□□□ -1.84
NUP54-208ENST00000508604 LMBRD2Q68DH5 695 aaPredicted RBP3.58□□□□□ -1.84
NUP54-208ENST00000508604 UBE2Q1Q7Z7E8 422 aa3.58□□□□□ -1.84
NUP54-208ENST00000508604 RBMXL3Q8N7X1 1067 aaKnown RBP3.58□□□□□ -1.84
NUP54-208ENST00000508604 MAFAQ8NHW3 353 aaPredicted RBP3.58□□□□□ -1.84
NUP54-208ENST00000508604 BPIFB1Q8TDL5 484 aa3.58□□□□□ -1.84
NUP54-208ENST00000508604 TMEM171Q8WVE6 324 aa3.58□□□□□ -1.84
NUP54-208ENST00000508604 TMEM204Q9BSN7 226 aa3.58□□□□□ -1.84
NUP54-208ENST00000508604 PIH1D1Q9NWS0 290 aaKnown RBP3.58□□□□□ -1.84
NUP54-208ENST00000508604 MGAT4CQ9UBM8 478 aa3.58□□□□□ -1.84
NUP54-208ENST00000508604 CPA4Q9UI42 421 aa3.58□□□□□ -1.84
NUP54-208ENST00000508604 DRG1Q9Y295 367 aaKnown RBP3.58□□□□□ -1.84
NUP54-208ENST00000508604 MED16Q9Y2X0 877 aa3.58□□□□□ -1.84
NUP54-208ENST00000508604 IGLV5-39A0A0G2JS06 123 aa3.57□□□□□ -1.84
NUP54-208ENST00000508604 CYSRT1A8MQ03 144 aa3.57□□□□□ -1.84
NUP54-208ENST00000508604 ALG1L2C9J202 215 aa3.57□□□□□ -1.84
NUP54-208ENST00000508604 GTPBP1O00178 669 aaKnown RBP3.57□□□□□ -1.84
NUP54-208ENST00000508604 KATNA1O75449 491 aa3.57□□□□□ -1.84
NUP54-208ENST00000508604 IL33O95760 270 aa3.57□□□□□ -1.84
NUP54-208ENST00000508604 APEHP13798 732 aaKnown RBP3.57□□□□□ -1.84
NUP54-208ENST00000508604 CREB1P16220 341 aa3.57□□□□□ -1.84
NUP54-208ENST00000508604 KCNJ4P48050 445 aa3.57□□□□□ -1.84
NUP54-208ENST00000508604 MTX1Q13505 466 aa3.57□□□□□ -1.84
NUP54-208ENST00000508604 ZIK1Q3SY52 487 aaPredicted RBP3.57□□□□□ -1.84
NUP54-208ENST00000508604 ZNF585BQ52M93 769 aa3.57□□□□□ -1.84
NUP54-208ENST00000508604 ZNF628Q5EBL2 1059 aa3.57□□□□□ -1.84
NUP54-208ENST00000508604 GAS2L3Q86XJ1 694 aa3.57□□□□□ -1.84
NUP54-208ENST00000508604 DCP1BQ8IZD4 617 aaKnown RBP3.57□□□□□ -1.84
NUP54-208ENST00000508604 SLC15A4Q8N697 577 aa3.57□□□□□ -1.84
NUP54-208ENST00000508604 DNAJC5GQ8N7S2 189 aa3.57□□□□□ -1.84
NUP54-208ENST00000508604 USP12O75317 370 aa3.56□□□□□ -1.84
NUP54-208ENST00000508604 CDK11BP21127 795 aaKnown RBP3.56□□□□□ -1.84
NUP54-208ENST00000508604 EPHA3P29320 983 aa3.56□□□□□ -1.84
NUP54-208ENST00000508604 THBS4P35443 961 aa3.56□□□□□ -1.84
NUP54-208ENST00000508604 IL6STP40189 918 aaPredicted RBP3.56□□□□□ -1.84
NUP54-208ENST00000508604 PFKFB3Q16875 520 aaPredicted RBP3.56□□□□□ -1.84
NUP54-208ENST00000508604 PLA1AQ53H76 456 aa3.56□□□□□ -1.84
NUP54-208ENST00000508604 PDXDC1Q6P996 788 aa3.56□□□□□ -1.84
NUP54-208ENST00000508604 ZNF783Q6ZMS7 281 aa3.56□□□□□ -1.84
NUP54-208ENST00000508604 ZNF793Q6ZN11 406 aa3.56□□□□□ -1.84
NUP54-208ENST00000508604 USP43Q70EL4 1123 aa3.56□□□□□ -1.84
NUP54-208ENST00000508604 MRPL44Q9H9J2 332 aaKnown RBP3.56□□□□□ -1.84
NUP54-208ENST00000508604 GBA2Q9HCG7 927 aaPredicted RBP3.56□□□□□ -1.84
NUP54-208ENST00000508604 LPAR3Q9UBY5 353 aa3.56□□□□□ -1.84
NUP54-208ENST00000508604 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.56□□□□□ -1.84
NUP54-208ENST00000508604 FOXN3O00409 490 aaPredicted RBP3.55□□□□□ -1.84
NUP54-208ENST00000508604 VCAM1P19320 739 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 DIO1P49895 249 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 BCAT1P54687 386 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 FAM50AQ14320 339 aaKnown RBP3.55□□□□□ -1.84
NUP54-208ENST00000508604 FAM110CQ1W6H9 321 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 DCAF12L1Q5VU92 463 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 MVB12AQ96EY5 273 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 MS4A7Q9GZW8 240 aaPredicted RBP3.55□□□□□ -1.84
NUP54-208ENST00000508604 ARMT1Q9H993 441 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 GAR1Q9NY12 217 aaKnown RBP3.55□□□□□ -1.84
NUP54-208ENST00000508604 USP35Q9P2H5 1018 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 STXBP5LQ9Y2K9 1186 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 TNKSO95271 1327 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 C4orf47A7E2U8 309 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 ERVV-2B6SEH9 535 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 ZXDBP98169 803 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 CFHR3Q02985 330 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 B4GALNT4Q76KP1 1039 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 CATIPQ7Z7H3 387 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 MPP5Q8N3R9 675 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms