RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 SH3BP1Q9Y3L3 701 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 INSL6Q9Y581 213 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 PCDHB6Q9Y5E3 794 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 DYNC1LI1Q9Y6G9 523 aaKnown RBP4.63□□□□□ -1.67
USP54-217ENST00000498213 NBEAQ8NFP9 2946 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 IGSF10Q6WRI0 2623 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.62□□□□□ -1.67
USP54-217ENST00000498213 NRP1O14786 923 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 NRP2O60462 931 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 KINO60870 393 aaKnown RBP4.62□□□□□ -1.67
USP54-217ENST00000498213 CABYRO75952 493 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 FKBP9O95302 570 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 GH2P01242 217 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 PRB1P04280 392 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 SUPT20HL2P0C7V6 817 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 TGM1P22735 817 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 MCM7P33993 719 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 KIR2DL3P43628 341 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 LSSP48449 732 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 NRG3P56975 720 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 MECOMQ03112 1051 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 SLFN5Q08AF3 891 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 COASYQ13057 564 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 GPNMBQ14956 572 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 TTF1Q15361 905 aaPredicted RBP4.62□□□□□ -1.67
USP54-217ENST00000498213 FSCN1Q16658 493 aaKnown RBP4.62□□□□□ -1.67
USP54-217ENST00000498213 HSP90AB4PQ58FF6 505 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 MIIPQ5JXC2 388 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 FKBP15Q5T1M5 1219 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 TATDN1Q6P1N9 297 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 FKBP9P1Q75LS8 142 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 ADGRD2Q7Z7M1 963 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 NOP9Q86U38 636 aaKnown RBP4.62□□□□□ -1.67
USP54-217ENST00000498213 ERC1Q8IUD2 1116 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 TRMT2AQ8IZ69 625 aaKnown RBP4.62□□□□□ -1.67
USP54-217ENST00000498213 MYOCDQ8IZQ8 938 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 ACER1Q8TDN7 264 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 USP7Q93009 1102 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 RTP3Q9BQQ7 232 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 SIL1Q9H173 461 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 CHMP4BQ9H444 224 aaKnown RBP4.62□□□□□ -1.67
USP54-217ENST00000498213 SPTLC3Q9NUV7 552 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 ABCF2Q9UG63 623 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 SERPINB13Q9UIV8 391 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 CDH22Q9UJ99 828 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 ING1Q9UK53 422 aaPredicted RBP4.62□□□□□ -1.67
USP54-217ENST00000498213 REXO2Q9Y3B8 237 aaKnown RBP4.62□□□□□ -1.67
USP54-217ENST00000498213 SPTA1P02549 2419 aa4.62□□□□□ -1.67
USP54-217ENST00000498213 DOCK2Q92608 1830 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 KDM1AO60341 852 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 MFAP3LO75121 409 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 IPO13O94829 963 aaKnown RBP4.61□□□□□ -1.67
USP54-217ENST00000498213 SLC25A27O95847 323 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 GNAI2P04899 355 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 C1SP09871 688 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 MYCLP1P12525 358 aaPredicted RBP4.61□□□□□ -1.67
USP54-217ENST00000498213 GNAT2P19087 354 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 CTNNB1P35222 781 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 PHKA1P46020 1223 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 NRIP1P48552 1158 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 MAN2A2P49641 1150 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 G3BP1Q13283 466 aaKnown RBP eCLIP4.61□□□□□ -1.67
USP54-217ENST00000498213 COG2Q14746 738 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 CCDC6Q16204 474 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 GORABQ5T7V8 394 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 GPR158Q5T848 1215 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 NAA16Q6N069 864 aaPredicted RBP4.61□□□□□ -1.67
USP54-217ENST00000498213 ZNF610Q8N9Z0 462 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 IL17DQ8TAD2 202 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 SPATA18Q8TC71 538 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 SSH1Q8WYL5 1049 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 SECISBP2LQ93073 1101 aaKnown RBP4.61□□□□□ -1.67
USP54-217ENST00000498213 ZNF503Q96F45 646 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 CCDC17Q96LX7 622 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 YME1L1Q96TA2 773 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 LSM14BQ9BX40 385 aaKnown RBP4.61□□□□□ -1.67
USP54-217ENST00000498213 OSBPL6Q9BZF3 934 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 HAPLN2Q9GZV7 340 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 MAF1Q9H063 256 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 DNAJC18Q9H819 358 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 ERVK-5Q9HDB9 667 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 SWAP70Q9UH65 585 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 ASTN1O14525 1302 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 SCN5AQ14524 2016 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 ITPR1Q14643 2758 aa4.61□□□□□ -1.67
USP54-217ENST00000498213 PIEZO2Q9H5I5 2752 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 DOPEY1Q5JWR5 2465 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 LOC102724159A0A0B4J2E5 919 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 ABHD14A-ACY1A0A1B0GW23 586 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 C2CD4DB7Z1M9 353 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 ENPP3O14638 875 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 PER2O15055 1255 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 TGM5O43548 720 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 ALDH1A2O94788 518 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 GLP2RO95838 553 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 DCNP07585 359 aaKnown RBP4.6□□□□□ -1.67
USP54-217ENST00000498213 ATF7P17544 494 aaPredicted RBP4.6□□□□□ -1.67
USP54-217ENST00000498213 NT5C2P49902 561 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 PHC1P78364 1004 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 HTRA4P83105 476 aaPredicted RBP4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms