RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 APOBEC3GQ9HC16 384 aaKnown RBP11.33□□□□□ -0.6
COL6A3-214ENST00000493608 HPS4Q9NQG7 708 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 TRPM5Q9NZQ8 1165 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 CHORDC1Q9UHD1 332 aaPredicted RBP11.33□□□□□ -0.6
COL6A3-214ENST00000493608 HELZP42694 1942 aaKnown RBP11.33□□□□□ -0.6
COL6A3-214ENST00000493608 FAM186AA6NE01 2351 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 TRIM49BA6NDI0 452 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 CETN3O15182 167 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 ST8SIA5O15466 376 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 SMC2O95347 1197 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 P4HA1P13674 534 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 CCDC130P13994 396 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 ASPAP45381 313 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 RPS9P46781 194 aaKnown RBP11.32□□□□□ -0.6
COL6A3-214ENST00000493608 ZXDBP98169 803 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 TAF10Q12962 218 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 RUNX3Q13761 415 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 GAS6Q14393 721 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 EDRF1Q3B7T1 1238 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 ITPRIPL2Q3MIP1 535 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 CC2D1AQ6P1N0 951 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-214ENST00000493608 FAM35AQ86V20 835 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 CYP4X1Q8N118 509 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 SCAMP5Q8TAC9 235 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 TAF4BQ92750 862 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 SEMA4DQ92854 862 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 TNIP3Q96KP6 325 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 GSDMAQ96QA5 445 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 TWNKQ96RR1 684 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 ELOVL4Q9GZR5 314 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 RNF38Q9H0F5 515 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 LINC00597Q9H2U6 94 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 FAM49BQ9NUQ9 324 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 RMND1Q9NWS8 449 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 GCNT4Q9P109 453 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 ZMYM5Q9UJ78 669 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 WNT6Q9Y6F9 365 aa11.32□□□□□ -0.6
COL6A3-214ENST00000493608 SCAMP3O14828 347 aaKnown RBP11.31□□□□□ -0.6
COL6A3-214ENST00000493608 AP1G2O75843 785 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 BEST1O76090 585 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 EPB41P11171 864 aaKnown RBP11.31□□□□□ -0.6
COL6A3-214ENST00000493608 CD58P19256 250 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 YWHAQP27348 245 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 ADORA2BP29275 332 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 HOXC13P31276 330 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 MAGEA9P43362 315 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 NOP14P78316 857 aaKnown RBP11.31□□□□□ -0.6
COL6A3-214ENST00000493608 MTF1Q14872 753 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 ZNF77Q15935 545 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 TCERG1LQ5VWI1 586 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 NAIF1Q69YI7 327 aaPredicted RBP11.31□□□□□ -0.6
COL6A3-214ENST00000493608 Q6ZS52 159 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 RALGPS2Q86X27 583 aaPredicted RBP11.31□□□□□ -0.6
COL6A3-214ENST00000493608 FUKQ8N0W3 1084 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 ADSSL1Q8N142 457 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 NUP93Q8N1F7 819 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 CRYBG2Q8N1P7 616 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 SPATA20Q8TB22 786 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 SLC2A14Q8TDB8 520 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 SH3RF2Q8TEC5 729 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 TIGD1Q96MW7 591 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 TSG101Q99816 390 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 SMOQ99835 787 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 TTLL2Q9BWV7 592 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 IMPG2Q9BZV3 1241 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 CHRDQ9H2X0 955 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 KIF9Q9HAQ2 790 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 TMEM8AQ9HCN3 771 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 C2orf42Q9NWW7 574 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 DUS2Q9NX74 493 aaKnown RBP11.31□□□□□ -0.6
COL6A3-214ENST00000493608 SMPD4Q9NXE4 827 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 MAN1B1Q9UKM7 699 aa11.31□□□□□ -0.6
COL6A3-214ENST00000493608 ZNF840PA6NDX5 716 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 SOBPA7XYQ1 873 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 LEFTY2O00292 366 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 BIN1O00499 593 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 NDUFV2P19404 249 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 MLLT6P55198 1093 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-214ENST00000493608 MAP3K7CLP57077 242 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 SATB1Q01826 763 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 ZNF268Q14587 947 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-214ENST00000493608 ZNF394Q53GI3 561 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 DCAF17Q5H9S7 520 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-214ENST00000493608 KRT39Q6A163 491 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 KLHL10Q6JEL2 608 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 PARP9Q8IXQ6 854 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 ZMIZ2Q8NF64 920 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 FBXO32Q969P5 355 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 JAKMIP2Q96AA8 810 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 CHFRQ96EP1 664 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 CEP295NLQ96MC4 621 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 FBRSL1Q9HCM7 1045 aaKnown RBP11.3□□□□□ -0.6
COL6A3-214ENST00000493608 KRT82Q9NSB4 513 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 EHD2Q9NZN4 543 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 HOOK1Q9UJC3 728 aaKnown RBP11.3□□□□□ -0.6
COL6A3-214ENST00000493608 FBXO4Q9UKT5 387 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 CPQQ9Y646 472 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 ATP8B3O60423 1300 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 WDR87Q6ZQQ6 2873 aa11.3□□□□□ -0.6
COL6A3-214ENST00000493608 EP300Q09472 2414 aaPredicted RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms