RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 FASTKD3Q14CZ7 662 aaKnown RBP22.05■■□□□ 1.12
CCDC88B-208ENST00000492980 PDK2Q15119 407 aa22.05■■□□□ 1.12
CCDC88B-208ENST00000492980 FAM47CQ5HY64 1035 aa22.05■■□□□ 1.12
CCDC88B-208ENST00000492980 CPT1BQ92523 772 aa22.05■■□□□ 1.12
CCDC88B-208ENST00000492980 TTC25Q96NG3 672 aa22.05■■□□□ 1.12
CCDC88B-208ENST00000492980 RNF157Q96PX1 679 aa22.05■■□□□ 1.12
CCDC88B-208ENST00000492980 MTG1Q9BT17 334 aaPredicted RBP22.05■■□□□ 1.12
CCDC88B-208ENST00000492980 GPATCH2LQ9NWQ4 482 aa22.05■■□□□ 1.12
CCDC88B-208ENST00000492980 SCN10AQ9Y5Y9 1956 aa22.05■■□□□ 1.12
CCDC88B-208ENST00000492980 IL4RP24394 825 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 LRPAP1P30533 357 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 HDAC4P56524 1084 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 GJA9P57773 515 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 ZC3H12AQ5D1E8 599 aaKnown RBP22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 SLC26A9Q7LBE3 791 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 OSTM1Q86WC4 334 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 PPIL6Q8IXY8 311 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 FAM71DQ8N9W8 422 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 SLC2A14Q8TDB8 520 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 PPP1R10Q96QC0 940 aaKnown RBP22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 TBCBQ99426 244 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 CDY2AQ9Y6F7 541 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 DYNC1LI1Q9Y6G9 523 aaKnown RBP22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 A0A087WUV0 522 aaPredicted RBP22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 HUS1O60921 280 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 CYBAP13498 195 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 WARSP23381 471 aaKnown RBP22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 SCNN1AP37088 669 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 GNASQ5JWF2 1037 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 ANKRD22Q5VYY1 191 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 CENPUQ71F23 418 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 MAP7D3Q8IWC1 876 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 TOP6BLQ8N6T0 577 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 ZFP42Q96MM3 310 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 CCDC77Q9BR77 488 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 C11orf84Q9BUA3 381 aaPredicted RBP22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 SNRNP25Q9BV90 132 aaKnown RBP22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 PCDH18Q9HCL0 1135 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 CYLDQ9NQC7 956 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 EURLQ9NYK6 297 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 GTF2IRD1Q9UHL9 959 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 TRPV2Q9Y5S1 764 aa22.04■■□□□ 1.12
CCDC88B-208ENST00000492980 FAM155AB1AL88 458 aaPredicted RBP22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 ALOX15BO15296 676 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 CDH16O75309 829 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 LCP1P13796 627 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 TFE3P19532 575 aaPredicted RBP22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 TKTP29401 623 aaKnown RBP22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 PTPN9P43378 593 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 CA9Q16790 459 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 CYP4X1Q8N118 509 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 NAT8LQ8N9F0 302 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 NCAPGQ9BPX3 1015 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 INTS9Q9NV88 658 aaKnown RBP22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 FAM169AQ9Y6X4 670 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 C5orf60A6NFR6 353 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 MDM4O15151 490 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 DESP17661 470 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 ROR1Q01973 937 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 QPCTQ16769 361 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 NBPF20Q3BBV1 942 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 HP1BP3Q5SSJ5 553 aaPredicted RBP22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 CXCL17Q6UXB2 119 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 TRAF3IP1Q8TDR0 691 aaPredicted RBP22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 P3H4Q92791 437 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 TNIP3Q96KP6 325 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 DNAI2Q9GZS0 605 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 NAALADL1Q9UQQ1 740 aa22.03■■□□□ 1.12
CCDC88B-208ENST00000492980 GOLGA8MH3BSY2 632 aa22.02■■□□□ 1.12
CCDC88B-208ENST00000492980 M0QZ92 97 aa22.02■■□□□ 1.12
CCDC88B-208ENST00000492980 MYO1CO00159 1063 aa22.02■■□□□ 1.12
CCDC88B-208ENST00000492980 CREB1P16220 341 aa22.02■■□□□ 1.12
CCDC88B-208ENST00000492980 GAD2Q05329 585 aa22.02■■□□□ 1.12
CCDC88B-208ENST00000492980 PDIA2Q13087 525 aaKnown RBP22.02■■□□□ 1.12
CCDC88B-208ENST00000492980 GDF6Q6KF10 455 aaPredicted RBP22.02■■□□□ 1.12
CCDC88B-208ENST00000492980 ARCQ7LC44 396 aa22.02■■□□□ 1.12
CCDC88B-208ENST00000492980 VSIG1Q86XK7 387 aa22.02■■□□□ 1.12
CCDC88B-208ENST00000492980 ZBED8Q8IZ13 594 aa22.02■■□□□ 1.12
CCDC88B-208ENST00000492980 PQLC3Q8N755 202 aa22.02■■□□□ 1.12
CCDC88B-208ENST00000492980 B3GALNT2Q8NCR0 500 aa22.02■■□□□ 1.12
CCDC88B-208ENST00000492980 CENPIQ92674 756 aaPredicted RBP22.02■■□□□ 1.12
CCDC88B-208ENST00000492980 WNT8BQ93098 351 aa22.02■■□□□ 1.12
CCDC88B-208ENST00000492980 HSFY1Q96LI6 401 aa22.02■■□□□ 1.12
CCDC88B-208ENST00000492980 ADAM33Q9BZ11 813 aa22.02■■□□□ 1.12
CCDC88B-208ENST00000492980 PHACTR1Q9C0D0 580 aa22.02■■□□□ 1.12
CCDC88B-208ENST00000492980 MEIS3P2A8K0S8 358 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 FOXO6A8MYZ6 492 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 ACADSBP45954 432 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 HIF1AQ16665 826 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 ANKRD20A8PQ5CZ79 823 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 DARS2Q6PI48 645 aaKnown RBP22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 C1orf228Q6PIY5 440 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 VSTM1Q6UX27 236 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 ZC3H18Q86VM9 953 aaKnown RBP22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 SPATS2Q86XZ4 545 aaKnown RBP22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 PLD5Q8N7P1 536 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 TRIB2Q92519 343 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 CHMP6Q96FZ7 201 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 CCDC134Q9H6E4 229 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 ST3GAL5Q9UNP4 418 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms