RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 RGS7P49802 495 aa12.75□□□□□ -0.37
HDAC6-230ENST00000488543 SPRED3Q2MJR0 410 aa12.75□□□□□ -0.37
HDAC6-230ENST00000488543 MYCBPAPQ8TBZ2 947 aa12.75□□□□□ -0.37
HDAC6-230ENST00000488543 MDM1Q8TC05 714 aa12.75□□□□□ -0.37
HDAC6-230ENST00000488543 MAGOHBQ96A72 148 aaKnown RBP12.75□□□□□ -0.37
HDAC6-230ENST00000488543 PCYOX1Q9UHG3 505 aa12.75□□□□□ -0.37
HDAC6-230ENST00000488543 NOVA2Q9UNW9 492 aaKnown RBP12.75□□□□□ -0.37
HDAC6-230ENST00000488543 CAPN7Q9Y6W3 813 aa12.75□□□□□ -0.37
HDAC6-230ENST00000488543 TTC3P53804 2025 aa12.75□□□□□ -0.37
HDAC6-230ENST00000488543 SHBGP04278 402 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 MYZAPP0CAP1 466 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 PBX3P40426 434 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 DR1Q01658 176 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 SLC25A11Q02978 314 aaKnown RBP12.74□□□□□ -0.37
HDAC6-230ENST00000488543 RNASELQ05823 741 aaKnown RBP12.74□□□□□ -0.37
HDAC6-230ENST00000488543 KLF1Q13351 362 aaPredicted RBP12.74□□□□□ -0.37
HDAC6-230ENST00000488543 DHX34Q14147 1143 aaKnown RBP12.74□□□□□ -0.37
HDAC6-230ENST00000488543 ODF2Q5BJF6 829 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 EIF1ADQ8N9N8 165 aaKnown RBP12.74□□□□□ -0.37
HDAC6-230ENST00000488543 IPO4Q8TEX9 1081 aaKnown RBP12.74□□□□□ -0.37
HDAC6-230ENST00000488543 APBB2Q92870 758 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 PLVAPQ9BX97 442 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 KLHL11Q9NVR0 708 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 MTUS1Q9ULD2 1270 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 FAM187AA6NFU0 413 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 GABRDO14764 452 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 TIMP1P01033 207 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 FAM163BP0C2L3 166 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 RALAP11233 206 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 RAG1P15918 1043 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 TKTP29401 623 aaKnown RBP12.74□□□□□ -0.37
HDAC6-230ENST00000488543 COILP38432 576 aaPredicted RBP12.74□□□□□ -0.37
HDAC6-230ENST00000488543 IFT88Q13099 833 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 FAM102AQ5T9C2 384 aaPredicted RBP12.74□□□□□ -0.37
HDAC6-230ENST00000488543 TMC3Q7Z5M5 1100 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 TMEM110Q86TL2 294 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 JAMLQ86YT9 394 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 STK32AQ8WU08 396 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 KHSRPQ92945 711 aaKnown RBP eCLIP12.74□□□□□ -0.37
HDAC6-230ENST00000488543 CASD1Q96PB1 797 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 LRRC19Q9H756 370 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 LRFN2Q9ULH4 789 aa12.74□□□□□ -0.37
HDAC6-230ENST00000488543 PRG3Q9Y2Y8 225 aaPredicted RBP12.74□□□□□ -0.37
HDAC6-230ENST00000488543 GOLGA6L10A6NI86 522 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 PI4K2BG5E9Z4 385 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 LRCH4O75427 683 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 ADORA2BP29275 332 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 RPL9P32969 192 aaKnown RBP12.73□□□□□ -0.37
HDAC6-230ENST00000488543 RPL34P49207 117 aaKnown RBP12.73□□□□□ -0.37
HDAC6-230ENST00000488543 MAGOHP61326 146 aaKnown RBP12.73□□□□□ -0.37
HDAC6-230ENST00000488543 CUL1Q13616 776 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 KIAA0319Q5VV43 1072 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 DUPD1Q68J44 220 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 OR6B2Q6IFH4 312 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 FAM117BQ6P1L5 589 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 OLFML1Q6UWY5 402 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 DSTYKQ6XUX3 929 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 UBE2Q1Q7Z7E8 422 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 COLGALT2Q8IYK4 626 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 ABI1Q8IZP0 508 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 ANKRD52Q8NB46 1076 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 RNF25Q96BH1 459 aaPredicted RBP12.73□□□□□ -0.37
HDAC6-230ENST00000488543 SLITRK1Q96PX8 696 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 OSBPL8Q9BZF1 889 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 HESX1Q9UBX0 185 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 R3HDM2Q9Y2K5 976 aaKnown RBP12.73□□□□□ -0.37
HDAC6-230ENST00000488543 C2CD4BA6NLJ0 364 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 HMGB1P1B2RPK0 211 aaPredicted RBP12.73□□□□□ -0.37
HDAC6-230ENST00000488543 INPPL1O15357 1258 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 KRT1P04264 644 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 IL1R2P27930 398 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 OR1G1P47890 313 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 FNTAP49354 379 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 DSC1Q08554 894 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 IKBKEQ14164 716 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 KRT71Q3SY84 523 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 CCDC137Q6PK04 289 aaKnown RBP12.73□□□□□ -0.37
HDAC6-230ENST00000488543 MFSD7Q6UXD7 560 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 CCDC50Q8IVM0 306 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 RCOR2Q8IZ40 523 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 B3GALNT2Q8NCR0 500 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 C1orf54Q8WWF1 131 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 RAPGEF5Q92565 580 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 ACSF2Q96CM8 615 aaPredicted RBP12.73□□□□□ -0.37
HDAC6-230ENST00000488543 HEMGNQ9BXL5 484 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 ELAC1Q9H777 363 aaKnown RBP12.73□□□□□ -0.37
HDAC6-230ENST00000488543 SNX24Q9Y343 169 aa12.73□□□□□ -0.37
HDAC6-230ENST00000488543 NT5C1B-RDH14C9J2C7 533 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 PAPSS1O43252 624 aaPredicted RBP12.72□□□□□ -0.37
HDAC6-230ENST00000488543 KCNJ1P48048 391 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 BCAT1P54687 386 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 ADCY2Q08462 1091 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 BST2Q10589 180 aaKnown RBP12.72□□□□□ -0.37
HDAC6-230ENST00000488543 URGCPQ8TCY9 931 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 SLC2A14Q8TDB8 520 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 ERP44Q9BS26 406 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 DCLK3Q9C098 648 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 MIS12Q9H081 205 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 NRDE2Q9H7Z3 1164 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 CHST7Q9NS84 486 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms