RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	PON2	Q15165	354 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	EDRF1	Q3B7T1	1238 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	STXBP5	Q5T5C0	1151 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	9.36	□□□□□ -0.91
USP4-213	ENST00000488520	TPGS2	Q68CL5	300 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	ANKRD40	Q6AI12	368 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	CENPP	Q6IPU0	288 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	ZNF280D	Q6N043	979 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	TXNDC11	Q6PKC3	985 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	LONP2	Q86WA8	852 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	FAM200A	Q8TCP9	573 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	TSPAN18	Q96SJ8	248 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	FGFBP2	Q9BYJ0	223 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	GZF1	Q9H116	711 aa	Predicted RBP	9.36	□□□□□ -0.91
USP4-213	ENST00000488520	NUCKS1	Q9H1E3	243 aa	Known RBP	9.36	□□□□□ -0.91
USP4-213	ENST00000488520	ARRDC1-AS1	Q9H2J1	176 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	PLEKHA5	Q9HAU0	1116 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	GPAM	Q9HCL2	828 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	TRPV5	Q9NQA5	729 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	RXFP3	Q9NSD7	469 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	SLC38A7	Q9NVC3	462 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	GTSE1	Q9NYZ3	720 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	HSPBP1	Q9NZL4	362 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	MAGEC2	Q9UBF1	373 aa	Predicted RBP	9.36	□□□□□ -0.91
USP4-213	ENST00000488520	AFF4	Q9UHB7	1163 aa	Known RBP	9.36	□□□□□ -0.91
USP4-213	ENST00000488520	RWDD2A	Q9UIY3	292 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	CTNND2	Q9UQB3	1225 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	TRAF3IP3	Q9Y228	551 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	TIMM13	Q9Y5L4	95 aa	Predicted RBP	9.36	□□□□□ -0.91
USP4-213	ENST00000488520	STYXL1	Q9Y6J8	313 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	FAM208B	Q5VWN6	2430 aa		9.36	□□□□□ -0.91
USP4-213	ENST00000488520	SPECC1L-ADORA2A	F8WAN1	911 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	ARNTL	O00327	626 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	TGFB1I1	O43294	461 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	STX10	O60499	249 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	CAVIN2	O95810	425 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	TPM2	P07951	284 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	CDK11B	P21127	795 aa	Known RBP	9.35	□□□□□ -0.91
USP4-213	ENST00000488520	CNR2	P34972	360 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	TYRO3	Q06418	890 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	SPAG1	Q07617	926 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	ZSCAN23	Q3MJ62	389 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	CCDC40	Q4G0X9	1142 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	XKR4	Q5GH76	650 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	RBM43	Q6ZSC3	357 aa	Known RBP	9.35	□□□□□ -0.91
USP4-213	ENST00000488520	FILIP1	Q7Z7B0	1213 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	SLC9A9	Q8IVB4	645 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	ARID3B	Q8IVW6	561 aa	Predicted RBP	9.35	□□□□□ -0.91
USP4-213	ENST00000488520	FAM114A1	Q8IWE2	563 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	C12orf56	Q8IXR9	622 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	CSGALNACT2	Q8N6G5	542 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	C12orf50	Q8NA57	414 aa	Predicted RBP	9.35	□□□□□ -0.91
USP4-213	ENST00000488520	ANKRD20A12P	Q8NF67	263 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	GTPBP3	Q969Y2	492 aa	Known RBP	9.35	□□□□□ -0.91
USP4-213	ENST00000488520	SAAL1	Q96ER3	474 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	SUSD3	Q96L08	255 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	LRRC3B	Q96PB8	259 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	CBWD1	Q9BRT8	395 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	SRRT	Q9BXP5	876 aa	Known RBP	9.35	□□□□□ -0.91
USP4-213	ENST00000488520	CRISPLD1	Q9H336	500 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	KCTD10	Q9H3F6	313 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	SMOC1	Q9H4F8	434 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	ASB7	Q9H672	318 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	METTL14	Q9HCE5	456 aa	Known RBP	9.35	□□□□□ -0.91
USP4-213	ENST00000488520	RBAK	Q9NYW8	714 aa	Predicted RBP	9.35	□□□□□ -0.91
USP4-213	ENST00000488520	ANGPTL2	Q9UKU9	493 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	YIPF1	Q9Y548	306 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	9.35	□□□□□ -0.91
USP4-213	ENST00000488520	ASPM	Q8IZT6	3477 aa		9.35	□□□□□ -0.91
USP4-213	ENST00000488520	AKAP13	Q12802	2813 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	CEP295	Q9C0D2	2601 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520		A6NJY4	79 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	TISP43	B9A030	160 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	CHAD	O15335	359 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	MEFV	O15553	781 aa	Predicted RBP	9.34	□□□□□ -0.91
USP4-213	ENST00000488520	SOAT2	O75908	522 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	CLSTN1	O94985	981 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	VNN2	O95498	520 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	TNNC2	P02585	160 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	KCNE1	P15382	129 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	TNNI1	P19237	187 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	ADSS	P30520	456 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	RPL9	P32969	192 aa	Known RBP	9.34	□□□□□ -0.91
USP4-213	ENST00000488520	HOXD13	P35453	343 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	PLA2G4A	P47712	749 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	ATP1A2	P50993	1020 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	EPHA5	P54756	1037 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	YWHAH	Q04917	246 aa	Predicted RBP	9.34	□□□□□ -0.91
USP4-213	ENST00000488520	TNK2	Q07912	1038 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	DUSP4	Q13115	394 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	SNRNP35	Q16560	246 aa	Known RBP	9.34	□□□□□ -0.91
USP4-213	ENST00000488520	NFIL3	Q16649	462 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	DGKK	Q5KSL6	1271 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	GPR158	Q5T848	1215 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	SLC39A4	Q6P5W5	647 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	PKN3	Q6P5Z2	889 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	TMC8	Q8IU68	726 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	FAM186B	Q8IYM0	893 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	LEMD2	Q8NC56	503 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	APPL2	Q8NEU8	664 aa		9.34	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms