RNA–Protein interactions for RNA: ENST00000486991.1

NR1H3-223, Transcript of nuclear receptor subfamily 1 group H member 3, human

TSL 4

Gene NR1H3, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1H3-223	ENST00000486991	TACC1	O75410	805 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	TDGF1	P13385	188 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	ACO1	P21399	889 aa	Known RBP	13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	TGM1	P22735	817 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	WARS	P23381	471 aa	Known RBP	13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	ACAT1	P24752	427 aa	Known RBP	13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	GNL1	P36915	607 aa	Predicted RBP	13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	STAT1	P42224	750 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	RPS9	P46781	194 aa	Known RBP	13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	SOX9	P48436	509 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	NDST1	P52848	882 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	GOLGA8F	Q08AF8	430 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	DMWD	Q09019	674 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	GOLGA8DP	Q0D2H9	430 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	TBX2	Q13207	712 aa	Predicted RBP	13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	VEPH1	Q14D04	833 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	INTS6L	Q5JSJ4	861 aa	Known RBP	13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	STXBP5	Q5T5C0	1151 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	TMEM270	Q6UE05	265 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	ITIH5	Q86UX2	942 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	TTC8	Q8TAM2	541 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	SHC3	Q92529	594 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	BAP1	Q92560	729 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	SMARCD2	Q92925	531 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	PSMG2	Q969U7	264 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	JAKMIP2	Q96AA8	810 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	E2F7	Q96AV8	911 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	NELL2	Q99435	816 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	LPIN3	Q9BQK8	851 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	EPC1	Q9H2F5	836 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	IL21	Q9HBE4	155 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	RBM12	Q9NTZ6	932 aa	Known RBP	13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	PIAS3	Q9Y6X2	628 aa		13.85	□□□□□ -0.19
NR1H3-223	ENST00000486991	LRRC53	A6NM62	1247 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	AKR1B15	C9JRZ8	316 aa	Predicted RBP	13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991		F8VZ95	297 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	NCAM2	O15394	837 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	PDGFRB	P09619	1106 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	FAM163B	P0C2L3	166 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	HAPLN1	P10915	354 aa	Predicted RBP	13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	KRT9	P35527	623 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	MAGEA9	P43362	315 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	LHX1	P48742	406 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	ATXN1	P54253	815 aa	Known RBP	13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	JAM2	P57087	298 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	ZBED6	P86452	979 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	TSPY1	Q01534	308 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	SATB1	Q01826	763 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	ORC1	Q13415	861 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	GAS6	Q14393	721 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	TAF12	Q16514	161 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	ZNF394	Q53GI3	561 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	TTC39C	Q8N584	583 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	UBR7	Q8N806	425 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	RBBP8NL	Q8NC74	664 aa	Predicted RBP	13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	SPPL2B	Q8TCT7	592 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	FAM3C	Q92520	227 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	DNASE1L2	Q92874	299 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	ACBD6	Q9BR61	282 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	CHRD	Q9H2X0	955 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	CRTAC1	Q9NQ79	661 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	DDX43	Q9NXZ2	648 aa	Known RBP	13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	IMPACT	Q9P2X3	320 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	HMGXB4	Q9UGU5	601 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	USP18	Q9UMW8	372 aa		13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991	MRPS17	Q9Y2R5	130 aa	Known RBP	13.84	□□□□□ -0.19
NR1H3-223	ENST00000486991		A0A1W2PRU2	124 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	DCDC2B	A2VCK2	349 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	HEPACAM2	A8MVW5	462 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	MFAP3L	O75121	409 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	ATP2C2	O75185	946 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	CILP	O75339	1184 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	GFPT2	O94808	682 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	HMGA1	P17096	107 aa	Known RBP	13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	PSMC3	P17980	439 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	LMO2	P25791	158 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	SOX5	P35711	763 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	GPR15	P49685	360 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	ADK	P55263	362 aa	Known RBP	13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	ARID5A	Q03989	594 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	INCA1	Q0VD86	236 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	SRSF5	Q13243	272 aa	Known RBP	13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	NFE2	Q16621	373 aa	Predicted RBP	13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	SFMBT2	Q5VUG0	894 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	FAM171B	Q6P995	826 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	TMEM150A	Q86TG1	271 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	CNGA4	Q8IV77	575 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	FAM71A	Q8IYT1	594 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	STKLD1	Q8NE28	680 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	LRRC3B	Q96PB8	259 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	TWNK	Q96RR1	684 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	SEPT5	Q99719	369 aa	Predicted RBP	13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	NT5C1A	Q9BXI3	368 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	DNAI2	Q9GZS0	605 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	SLITRK6	Q9H5Y7	841 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	FAM124B	Q9H5Z6	455 aa	Predicted RBP	13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	TRPV4	Q9HBA0	871 aa		13.83	□□□□□ -0.2
NR1H3-223	ENST00000486991	C2orf42	Q9NWW7	574 aa		13.83	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms