RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 GPC5P78333 572 aa16.76■□□□□ 0.27
UPF3A-208ENST00000484246 PDE4CQ08493 712 aa16.76■□□□□ 0.27
UPF3A-208ENST00000484246 SCML4Q8N228 414 aa16.76■□□□□ 0.27
UPF3A-208ENST00000484246 ZNF276Q8N554 614 aa16.76■□□□□ 0.27
UPF3A-208ENST00000484246 BPIFB1Q8TDL5 484 aa16.76■□□□□ 0.27
UPF3A-208ENST00000484246 LRRC3BQ96PB8 259 aa16.76■□□□□ 0.27
UPF3A-208ENST00000484246 ERGIC2Q96RQ1 377 aa16.76■□□□□ 0.27
UPF3A-208ENST00000484246 SLC22A12Q96S37 553 aa16.76■□□□□ 0.27
UPF3A-208ENST00000484246 GANQ9H2C0 597 aa16.76■□□□□ 0.27
UPF3A-208ENST00000484246 CYLDQ9NQC7 956 aa16.76■□□□□ 0.27
UPF3A-208ENST00000484246 GMIPQ9P107 970 aa16.76■□□□□ 0.27
UPF3A-208ENST00000484246 PATJQ8NI35 1801 aa16.75■□□□□ 0.27
UPF3A-208ENST00000484246 PES1O00541 588 aaKnown RBP16.75■□□□□ 0.27
UPF3A-208ENST00000484246 CKMP06732 381 aa16.75■□□□□ 0.27
UPF3A-208ENST00000484246 BRD2P25440 801 aaKnown RBP16.75■□□□□ 0.27
UPF3A-208ENST00000484246 PSEN1P49768 467 aa16.75■□□□□ 0.27
UPF3A-208ENST00000484246 MLLT6P55198 1093 aaPredicted RBP16.75■□□□□ 0.27
UPF3A-208ENST00000484246 PLCB2Q00722 1185 aa16.75■□□□□ 0.27
UPF3A-208ENST00000484246 NFKBIBQ15653 356 aa16.75■□□□□ 0.27
UPF3A-208ENST00000484246 ZNF77Q15935 545 aa16.75■□□□□ 0.27
UPF3A-208ENST00000484246 ARHGAP29Q52LW3 1261 aa16.75■□□□□ 0.27
UPF3A-208ENST00000484246 KLHDC10Q6PID8 442 aa16.75■□□□□ 0.27
UPF3A-208ENST00000484246 FAM71AQ8IYT1 594 aa16.75■□□□□ 0.27
UPF3A-208ENST00000484246 ST13P5Q8NFI4 369 aaPredicted RBP16.75■□□□□ 0.27
UPF3A-208ENST00000484246 SLC35F5Q8WV83 523 aa16.75■□□□□ 0.27
UPF3A-208ENST00000484246 IRF7Q92985 503 aa16.75■□□□□ 0.27
UPF3A-208ENST00000484246 LSM14BQ9BX40 385 aaKnown RBP16.75■□□□□ 0.27
UPF3A-208ENST00000484246 ARHGEF3Q9NR81 526 aa16.75■□□□□ 0.27
UPF3A-208ENST00000484246 TLR8Q9NR97 1041 aaKnown RBP16.75■□□□□ 0.27
UPF3A-208ENST00000484246 FHOD1Q9Y613 1164 aa16.75■□□□□ 0.27
UPF3A-208ENST00000484246 DPYSL4O14531 572 aa16.74■□□□□ 0.27
UPF3A-208ENST00000484246 MED7O43513 233 aa16.74■□□□□ 0.27
UPF3A-208ENST00000484246 HDCP19113 662 aa16.74■□□□□ 0.27
UPF3A-208ENST00000484246 CDK11BP21127 795 aaKnown RBP16.74■□□□□ 0.27
UPF3A-208ENST00000484246 GNA15P30679 374 aa16.74■□□□□ 0.27
UPF3A-208ENST00000484246 RPL34P49207 117 aaKnown RBP16.74■□□□□ 0.27
UPF3A-208ENST00000484246 GRM2Q14416 872 aa16.74■□□□□ 0.27
UPF3A-208ENST00000484246 ARHGAP44Q17R89 818 aa16.74■□□□□ 0.27
UPF3A-208ENST00000484246 HECTD3Q5T447 861 aa16.74■□□□□ 0.27
UPF3A-208ENST00000484246 PM20D1Q6GTS8 502 aa16.74■□□□□ 0.27
UPF3A-208ENST00000484246 ARL14EPQ8N8R7 260 aaPredicted RBP16.74■□□□□ 0.27
UPF3A-208ENST00000484246 STK32AQ8WU08 396 aa16.74■□□□□ 0.27
UPF3A-208ENST00000484246 MSANTD3Q96H12 275 aa16.74■□□□□ 0.27
UPF3A-208ENST00000484246 HSFY1Q96LI6 401 aa16.74■□□□□ 0.27
UPF3A-208ENST00000484246 STK33Q9BYT3 514 aa16.74■□□□□ 0.27
UPF3A-208ENST00000484246 CBX8Q9HC52 389 aa16.74■□□□□ 0.27
UPF3A-208ENST00000484246 TRPC7Q9HCX4 862 aa16.74■□□□□ 0.27
UPF3A-208ENST00000484246 CLIC5Q9NZA1 410 aa16.74■□□□□ 0.27
UPF3A-208ENST00000484246 CCL26Q9Y258 94 aa16.74■□□□□ 0.27
UPF3A-208ENST00000484246 TECTAO75443 2155 aa16.74■□□□□ 0.27
UPF3A-208ENST00000484246 NUP210Q8TEM1 1887 aaPredicted RBP16.73■□□□□ 0.27
UPF3A-208ENST00000484246 GREB1Q4ZG55 1949 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 F8VZ95 297 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 M0QYV0 167 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 TULP2O00295 520 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 ZNF263O14978 683 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 CYP26A1O43174 497 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 CFHP08603 1231 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 GDI1P31150 447 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 PLA2G5P39877 138 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 VASPP50552 380 aaPredicted RBP16.73■□□□□ 0.27
UPF3A-208ENST00000484246 PRKCQQ04759 706 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 IFRD2Q12894 506 aaPredicted RBP16.73■□□□□ 0.27
UPF3A-208ENST00000484246 DRAP1Q14919 205 aaPredicted RBP16.73■□□□□ 0.27
UPF3A-208ENST00000484246 SYCP1Q15431 976 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 BHLHA9Q7RTU4 235 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 ARHGAP18Q8N392 663 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 RIN3Q8TB24 985 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 ZNF606Q8WXB4 792 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 FAM122AQ96E09 287 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 LRFN3Q9BTN0 628 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 DDX23Q9BUQ8 820 aaKnown RBP16.73■□□□□ 0.27
UPF3A-208ENST00000484246 SMG9Q9H0W8 520 aaKnown RBP16.73■□□□□ 0.27
UPF3A-208ENST00000484246 BRD9Q9H8M2 597 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 CNGB3Q9NQW8 809 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 FBXL21Q9UKT6 434 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 PCDHGC3Q9UN70 934 aa16.73■□□□□ 0.27
UPF3A-208ENST00000484246 KRBA1A5PL33 1030 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 FAM86C2PA6NEL3 165 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 FOXN3O00409 490 aaPredicted RBP16.72■□□□□ 0.27
UPF3A-208ENST00000484246 COCHO43405 550 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 TLR5O60602 858 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 GLULP15104 373 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 GPD2P43304 727 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 PGFP49763 221 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 TKTL1P51854 596 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 STARD6P59095 220 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 BPIFB4P59827 614 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 PTK2Q05397 1052 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 MTF1Q14872 753 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 MLF2Q15773 248 aaPredicted RBP16.72■□□□□ 0.27
UPF3A-208ENST00000484246 HFE2Q6ZVN8 426 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 SCD5Q86SK9 330 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 DDX42Q86XP3 938 aaKnown RBP eCLIP16.72■□□□□ 0.27
UPF3A-208ENST00000484246 YAF2Q8IY57 180 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 FBXL6Q8N531 539 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 UBA3Q8TBC4 463 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 SECISBP2LQ93073 1101 aaKnown RBP16.72■□□□□ 0.27
UPF3A-208ENST00000484246 ZFRQ96KR1 1074 aaKnown RBP16.72■□□□□ 0.27
UPF3A-208ENST00000484246 CYP2S1Q96SQ9 504 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms