RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 KLHL4Q9C0H6 718 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 DBNDD1Q9H9R9 158 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 CNTN6Q9UQ52 1028 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 PLLPQ9Y342 182 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 PCDHAC2Q9Y5I4 1007 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 TCRBV7S3A2A0A539 114 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 TTC36A6NLP5 189 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 PEX14O75381 377 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 FAM155BO75949 473 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 C4BPAP04003 597 aaKnown RBP13.84□□□□□ -0.19
USP40-214ENST00000483519 ETS2P15036 469 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 RPL26P61254 145 aaKnown RBP13.84□□□□□ -0.19
USP40-214ENST00000483519 LGSNQ5TDP6 509 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 WDR78Q5VTH9 848 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 BBS12Q6ZW61 710 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 FAM160B2Q86V87 743 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 SPATA24Q86W54 205 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 SLC25A41Q8N5S1 370 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 JADE3Q92613 823 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 HIC2Q96JB3 615 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 DEFB129Q9H1M3 183 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 CHCHD3Q9NX63 227 aaKnown RBP13.84□□□□□ -0.19
USP40-214ENST00000483519 TMX2Q9Y320 296 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 TRIM49D1C9J1S8 452 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 CST8O60676 142 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 LSM8O95777 96 aaKnown RBP13.83□□□□□ -0.2
USP40-214ENST00000483519 SNRPAP09012 282 aaKnown RBP13.83□□□□□ -0.2
USP40-214ENST00000483519 IRX4P78413 519 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 CHI3L2Q15782 390 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 TAB3Q8N5C8 712 aaPredicted RBP13.83□□□□□ -0.2
USP40-214ENST00000483519 EPB41L1Q9H4G0 881 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 SIRPGQ9P1W8 387 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 SAE1Q9UBE0 346 aaPredicted RBP13.83□□□□□ -0.2
USP40-214ENST00000483519 UBIAD1Q9Y5Z9 338 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 ARHGAP42A6NI28 874 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 C3orf70A6NLC5 250 aaPredicted RBP13.83□□□□□ -0.2
USP40-214ENST00000483519 PRR5-ARHGAP8B1AHC4 643 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 CSDE1O75534 798 aaKnown RBP13.83□□□□□ -0.2
USP40-214ENST00000483519 KRT7P08729 469 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 HARSP12081 509 aaKnown RBP13.83□□□□□ -0.2
USP40-214ENST00000483519 VAV1P15498 845 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 AOC1P19801 751 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 ARHGAP8P85298 464 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 OGDHQ02218 1023 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 HSF5Q4G112 596 aaPredicted RBP13.83□□□□□ -0.2
USP40-214ENST00000483519 NUDCD3Q8IVD9 361 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 GSTCDQ8NEC7 633 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 ZNF606Q8WXB4 792 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 BSNDQ8WZ55 320 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 SIKE1Q9BRV8 207 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 MECRQ9BV79 373 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 OCEL1Q9H607 264 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 APOBEC3GQ9HC16 384 aaKnown RBP13.83□□□□□ -0.2
USP40-214ENST00000483519 SERPINA10Q9UK55 444 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 SSX2IPQ9Y2D8 614 aa13.83□□□□□ -0.2
USP40-214ENST00000483519 HBS1LQ9Y450 684 aaKnown RBP13.83□□□□□ -0.2
USP40-214ENST00000483519 A0A088AWK7 358 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 TCRBV5S1A1TA0A578 114 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 WDR64B1ANS9 1081 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 ATP9BO43861 1147 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 VNN1O95497 513 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 WEE2P0C1S8 567 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 SFNP31947 248 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 ABCD1P33897 745 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 ITGA9Q13797 1035 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 TEX44Q53QW1 395 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 ANGEL2Q5VTE6 544 aaKnown RBP13.82□□□□□ -0.2
USP40-214ENST00000483519 CDHR3Q6ZTQ4 885 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 THNSL1Q8IYQ7 743 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 IL31RAQ8NI17 732 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 C10orf88Q9H8K7 445 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 PNPLA8Q9NP80 782 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 MKS1Q9NXB0 559 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 ZNF180Q9UJW8 692 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 TEX264Q9Y6I9 313 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 H0YCG3 227 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 KITP10721 976 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 RGS2P41220 211 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 LIG4P49917 911 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 WASHC5Q12768 1159 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 MMEL1Q495T6 779 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 IGDCC3Q8IVU1 814 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 CTAGE3PQ8IX95 158 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 TMEM35BQ8NCS4 154 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 PYDC1Q8WXC3 89 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 LMCD1Q9NZU5 365 aa13.82□□□□□ -0.2
USP40-214ENST00000483519 MARCOQ9UEW3 520 aaPredicted RBP13.82□□□□□ -0.2
USP40-214ENST00000483519 CCDC195A0A1B0GUA6 201 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 MCF2LO15068 1137 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 PLA2G6O60733 806 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 VCLP18206 1134 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 CPOXP36551 454 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 DPYSL3Q14195 570 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 HADHQ16836 314 aaKnown RBP13.81□□□□□ -0.2
USP40-214ENST00000483519 SFT2D3Q587I9 215 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 UNC45BQ8IWX7 931 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 FAM71DQ8N9W8 422 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 ACER1Q8TDN7 264 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 CSRNP1Q96S65 589 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 CCNT2O60583 730 aaKnown RBP13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms