RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 CPLX4Q7Z7G2 160 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 SPATS2Q86XZ4 545 aaKnown RBP13.59□□□□□ -0.23
SEC13-216ENST00000479868 PPIL6Q8IXY8 311 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 CCDC13Q8IYE1 715 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 CRYBG2Q8N1P7 616 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 NAT8LQ8N9F0 302 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 SEC16BQ96JE7 1060 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 TTC25Q96NG3 672 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 APBA2Q99767 749 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 CCDC77Q9BR77 488 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 ADAM33Q9BZ11 813 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 GDAP2Q9NXN4 497 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 TRPM7Q96QT4 1865 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 EXOC1LA0A1B0GW35 172 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 MANSC4A6NHS7 340 aaPredicted RBP13.59□□□□□ -0.23
SEC13-216ENST00000479868 HOXC8P31273 242 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 TAF6P49848 677 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 HDAC4P56524 1084 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 BST2Q10589 180 aaKnown RBP13.59□□□□□ -0.23
SEC13-216ENST00000479868 MPP2Q14168 576 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 KRT81Q14533 505 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 HIF1AQ16665 826 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 MSS51Q4VC12 460 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 FNBP1LQ5T0N5 605 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 C6orf89Q6UWU4 347 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 CENPUQ71F23 418 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 PCGF5Q86SE9 256 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 ANKMY2Q8IV38 441 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 ANKRD52Q8NB46 1076 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 APPL2Q8NEU8 664 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 MGARPQ8TDB4 240 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 STK32AQ8WU08 396 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 ZNF560Q96MR9 790 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 RNF157Q96PX1 679 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 SNRNP25Q9BV90 132 aaKnown RBP13.59□□□□□ -0.23
SEC13-216ENST00000479868 KATNAL1Q9BW62 490 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 NMRK2Q9NPI5 230 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 Q9Y3F1 56 aa13.59□□□□□ -0.23
SEC13-216ENST00000479868 TMEM63AO94886 807 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 CTGFP29279 349 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 ADCY1Q08828 1119 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 IFT88Q13099 833 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 MTM1Q13496 603 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 BOLA3Q53S33 107 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 C1orf228Q6PIY5 440 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 MICALCLQ6ZW33 695 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 FAM228AQ86W67 206 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 IFNL1Q8IU54 200 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 SRRM1Q8IYB3 904 aaKnown RBP13.58□□□□□ -0.24
SEC13-216ENST00000479868 SLC2A14Q8TDB8 520 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 P3H4Q92791 437 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 CCDC134Q9H6E4 229 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 VPS37BQ9H9H4 285 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 PCDH18Q9HCL0 1135 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 KCNK9Q9NPC2 374 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 ATXN2Q99700 1313 aaKnown RBP13.58□□□□□ -0.24
SEC13-216ENST00000479868 LCP1P13796 627 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 BRAFP15056 766 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 IGFBP6P24592 240 aaPredicted RBP13.58□□□□□ -0.24
SEC13-216ENST00000479868 PNPLA4P41247 253 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 ATXN1P54253 815 aaKnown RBP13.58□□□□□ -0.24
SEC13-216ENST00000479868 BCAT1P54687 386 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 GPX6P59796 221 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 LILRA4P59901 499 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 ROR1Q01973 937 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 PDK2Q15119 407 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 TMED2Q15363 201 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 FAM47CQ5HY64 1035 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 TWF2Q6IBS0 349 aaKnown RBP13.58□□□□□ -0.24
SEC13-216ENST00000479868 DARS2Q6PI48 645 aaKnown RBP13.58□□□□□ -0.24
SEC13-216ENST00000479868 LIMS2Q7Z4I7 341 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 LRRC34Q8IZ02 419 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 PQLC3Q8N755 202 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 PLD5Q8N7P1 536 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 MAML1Q92585 1016 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 ZFP42Q96MM3 310 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 WDR83Q9BRX9 315 aaKnown RBP13.58□□□□□ -0.24
SEC13-216ENST00000479868 SNX25Q9H3E2 840 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 MLXIPLQ9NP71 852 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 GGA2Q9UJY4 613 aa13.58□□□□□ -0.24
SEC13-216ENST00000479868 MEIS3P2A8K0S8 358 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 PTGESO14684 152 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 NDC80O14777 642 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 TNPO2O14787 897 aaKnown RBP13.57□□□□□ -0.24
SEC13-216ENST00000479868 XPOTO43592 962 aaKnown RBP13.57□□□□□ -0.24
SEC13-216ENST00000479868 MAP3K6O95382 1288 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 C6orf222P0C671 652 aaPredicted RBP13.57□□□□□ -0.24
SEC13-216ENST00000479868 TKTP29401 623 aaKnown RBP13.57□□□□□ -0.24
SEC13-216ENST00000479868 BASP1P80723 227 aaKnown RBP13.57□□□□□ -0.24
SEC13-216ENST00000479868 TFDP2Q14188 446 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 ANKRD20A8PQ5CZ79 823 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 GKAP1Q5VSY0 366 aaPredicted RBP13.57□□□□□ -0.24
SEC13-216ENST00000479868 SLC26A9Q7LBE3 791 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 OSTM1Q86WC4 334 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 ZDHHC17Q8IUH5 632 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 MAP7D3Q8IWC1 876 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 ADGRF2Q8IZF7 708 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 NME8Q8N427 588 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 ANKRD42Q8N9B4 389 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 TRPV1Q8NER1 839 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms