RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 LIG4P49917 911 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 LIMK1P53667 647 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 NLRP11P59045 1033 aaKnown RBP12.32□□□□□ -0.44
SYNE2-207ENST00000458046 MTMR2Q13614 643 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 SCARA3Q6AZY7 606 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 TRIM68Q6AZZ1 485 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 CYP4F22Q6NT55 531 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 TMEM270Q6UE05 265 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 BNC2Q6ZN30 1099 aaPredicted RBP12.32□□□□□ -0.44
SYNE2-207ENST00000458046 FAM83AQ86UY5 434 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 MAIP1Q8WWC4 291 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 MFSD3Q96ES6 412 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 ZBTB45Q96K62 511 aaPredicted RBP12.32□□□□□ -0.44
SYNE2-207ENST00000458046 PPM1MQ96MI6 270 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 OSBPL8Q9BZF1 889 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 XPNPEP1Q9NQW7 623 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 PTPRJQ12913 1337 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 M0R3H8 397 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 GABRDO14764 452 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 ZBED4O75132 1171 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 GSCP56915 257 aaPredicted RBP12.32□□□□□ -0.44
SYNE2-207ENST00000458046 MTERF2Q49AM1 385 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 TDRD10Q5VZ19 366 aaKnown RBP12.32□□□□□ -0.44
SYNE2-207ENST00000458046 IZUMO3Q5VZ72 239 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 ENOSF1Q7L5Y1 443 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 SLC41A1Q8IVJ1 513 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 RSRC1Q96IZ7 334 aaKnown RBP12.32□□□□□ -0.44
SYNE2-207ENST00000458046 STARD7Q9NQZ5 370 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 PCDHB4Q9Y5E5 795 aa12.32□□□□□ -0.44
SYNE2-207ENST00000458046 SCN4AP35499 1836 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 STBD1O95210 358 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 CNOT4O95628 575 aaKnown RBP12.31□□□□□ -0.44
SYNE2-207ENST00000458046 ATP6V1G2O95670 118 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 GHRHRQ02643 423 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 KLF1Q13351 362 aaPredicted RBP12.31□□□□□ -0.44
SYNE2-207ENST00000458046 SMAD4Q13485 552 aaKnown RBP12.31□□□□□ -0.44
SYNE2-207ENST00000458046 WSCD2Q2TBF2 565 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 SEZ6Q53EL9 994 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 MTHFD1LQ6UB35 978 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 SYDE1Q6ZW31 735 aaPredicted RBP12.31□□□□□ -0.44
SYNE2-207ENST00000458046 MON1BQ7L1V2 547 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 FASTKD5Q7L8L6 764 aaKnown RBP12.31□□□□□ -0.44
SYNE2-207ENST00000458046 ZBTB46Q86UZ6 589 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 VSIG10LQ86VR7 867 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 FAM169BQ8N8A8 192 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 LPAR1Q92633 364 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 TMEM143Q96AN5 459 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 ATG4CQ96DT6 458 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 GPATCH1Q9BRR8 931 aaKnown RBP12.31□□□□□ -0.44
SYNE2-207ENST00000458046 COL25A1Q9BXS0 654 aaPredicted RBP12.31□□□□□ -0.44
SYNE2-207ENST00000458046 POLR3FQ9H1D9 316 aaPredicted RBP12.31□□□□□ -0.44
SYNE2-207ENST00000458046 APOBEC3GQ9HC16 384 aaKnown RBP12.31□□□□□ -0.44
SYNE2-207ENST00000458046 UMODL1Q5DID0 1318 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 A0A1B0GVC2 190 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 TLR3O15455 904 aaKnown RBP12.31□□□□□ -0.44
SYNE2-207ENST00000458046 MAP3K6O95382 1288 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 DNTTP04053 509 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 CYP1A1P04798 512 aaPredicted RBP12.31□□□□□ -0.44
SYNE2-207ENST00000458046 ZSCAN5DPP0CG00 497 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 TCF4P15884 667 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 ATP5DP30049 168 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 STX2P32856 288 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 SKIV2L2P42285 1042 aaKnown RBP12.31□□□□□ -0.44
SYNE2-207ENST00000458046 KCNJ2P63252 427 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 CENPCQ03188 943 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 MAMLD1Q13495 774 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 ZBTB41Q5SVQ8 909 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 FKBP1CQ5VVH2 108 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 C15orf39Q6ZRI6 1047 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 CCDC60Q8IWA6 550 aaPredicted RBP12.31□□□□□ -0.44
SYNE2-207ENST00000458046 RHOT1Q8IXI2 618 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 GLIS1Q8NBF1 620 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 IPMKQ8NFU5 416 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 CKAP2Q8WWK9 683 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 IFT74Q96LB3 600 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 TGS1Q96RS0 853 aaKnown RBP12.31□□□□□ -0.44
SYNE2-207ENST00000458046 CRB3Q9BUF7 120 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 KIAA1683Q9H0B3 1180 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 ECT2Q9H8V3 914 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 ATP6V0A4Q9HBG4 840 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 NOD2Q9HC29 1040 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 RNF146Q9NTX7 359 aa12.31□□□□□ -0.44
SYNE2-207ENST00000458046 EXTL3O43909 919 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 SUN1O94901 812 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 VNN1O95497 513 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 C4BPAP04003 597 aaKnown RBP12.3□□□□□ -0.44
SYNE2-207ENST00000458046 GSTA1P08263 222 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 MYBL1P10243 752 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 CCNG2Q16589 344 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 P3H1Q32P28 736 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 ZACNQ401N2 412 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 LIN9Q5TKA1 542 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 KIF2BQ8N4N8 673 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.3□□□□□ -0.44
SYNE2-207ENST00000458046 DPF3Q92784 378 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 ATP6V0A1Q93050 837 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 THOC1Q96FV9 657 aaKnown RBP12.3□□□□□ -0.44
SYNE2-207ENST00000458046 ADAM33Q9BZ11 813 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 CYP26B1Q9NR63 512 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 AGO2Q9UKV8 859 aaKnown RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms