RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 BARHL2Q9NY43 387 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 CROTQ9UKG9 612 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 HBS1LQ9Y450 684 aaKnown RBP5.39□□□□□ -1.55
CSMD3-204ENST00000455883 KIAA2026Q5HYC2 2103 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 LRRIQ4A6NIV6 560 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 PARNO95453 639 aaKnown RBP5.39□□□□□ -1.55
CSMD3-204ENST00000455883 TMEM253P0C7T8 217 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 STOMP27105 288 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 ARHGDIBP52566 201 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 TRIM28Q13263 835 aaKnown RBP5.39□□□□□ -1.55
CSMD3-204ENST00000455883 TKFCQ3LXA3 575 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 FAM102BQ5T8I3 360 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 TMEM154Q6P9G4 183 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 STOX1Q6ZVD7 989 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 METTL16Q86W50 562 aaKnown RBP5.39□□□□□ -1.55
CSMD3-204ENST00000455883 MIER2Q8N344 545 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 TDRD5Q8NAT2 981 aaKnown RBP5.39□□□□□ -1.55
CSMD3-204ENST00000455883 USP38Q8NB14 1042 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 DHX33Q9H6R0 707 aaKnown RBP5.39□□□□□ -1.55
CSMD3-204ENST00000455883 RNPEPL1Q9HAU8 725 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 HUS1O60921 280 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 PRKAR1AP10644 381 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 PAPD7Q5XG87 772 aaKnown RBP5.38□□□□□ -1.55
CSMD3-204ENST00000455883 DENND6AQ8IWF6 608 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 CMTR1Q8N1G2 835 aaKnown RBP5.38□□□□□ -1.55
CSMD3-204ENST00000455883 ANKS1AQ92625 1134 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 ZNF333Q96JL9 665 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 TBCCD1Q9NVR7 557 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 ZSCAN32Q9NX65 697 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 ST3GAL5Q9UNP4 418 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 DTNAQ9Y4J8 743 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 C3P01024 1663 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 PKDREJQ9NTG1 2253 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 AKAP10O43572 662 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 CRABP2P29373 138 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 TXNDC11Q6PKC3 985 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 DPH6Q7L8W6 267 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 HDAC2Q92769 488 aaKnown RBP5.38□□□□□ -1.55
CSMD3-204ENST00000455883 C18orf8Q96DM3 657 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 BTBD9Q96Q07 612 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 LRRC2Q9BYS8 371 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 DLGAP2Q9P1A6 1054 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 ABCC3O15438 1527 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 DISP1Q96F81 1524 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 DLGAP3O95886 979 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 TGM2P21980 687 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 GALNT3Q14435 633 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 STRIP1Q5VSL9 837 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 USP31Q70CQ4 1352 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 ADGRB2O60241 1585 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 TTLL8A6PVC2 850 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 SNPHO15079 494 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 SRGNP10124 158 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 HTR7P34969 479 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 SLC12A1Q13621 1099 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 GK3PQ14409 553 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 ZNF568Q3ZCX4 644 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 DPP8Q6V1X1 898 aaPredicted RBP5.38□□□□□ -1.55
CSMD3-204ENST00000455883 FGD2Q7Z6J4 655 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.38□□□□□ -1.55
CSMD3-204ENST00000455883 SMCR8Q8TEV9 937 aaPredicted RBP5.38□□□□□ -1.55
CSMD3-204ENST00000455883 IFT43Q96FT9 208 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 SENP3Q9H4L4 574 aaPredicted RBP5.38□□□□□ -1.55
CSMD3-204ENST00000455883 MAP3K19Q56UN5 1328 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 TMEM120BA0PK00 339 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 SDR42E2A6NKP2 422 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 HOXC9P31274 260 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 GRK3P35626 688 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 TECP42680 631 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 SLC18A1P54219 525 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 LBRQ14739 615 aaKnown RBP5.38□□□□□ -1.55
CSMD3-204ENST00000455883 EFHC1Q5JVL4 640 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 CLHC1Q8NHS4 586 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 PTPRN2Q92932 1015 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 SSU72Q9NP77 194 aaKnown RBP5.38□□□□□ -1.55
CSMD3-204ENST00000455883 INTS13Q9NVM9 706 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 MCM3APO60318 1980 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 ANKRD31Q8N7Z5 1873 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 FARP2O94887 1054 aaPredicted RBP5.38□□□□□ -1.55
CSMD3-204ENST00000455883 CASP2P42575 452 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 HIST2H2ACQ16777 129 aaPredicted RBP5.38□□□□□ -1.55
CSMD3-204ENST00000455883 FBXO43Q4G163 708 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 HIST2H2AA3Q6FI13 130 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 TTC29Q8NA56 475 aaPredicted RBP5.38□□□□□ -1.55
CSMD3-204ENST00000455883 PSMB7Q99436 277 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 BAIAP2Q9UQB8 552 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 H0YIN7 160 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 LZTR1Q8N653 840 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 CCNYQ8ND76 341 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 OR7A2PQ8NGA2 310 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 POF1BQ8WVV4 589 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 MYLPFQ96A32 169 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 E2F7Q96AV8 911 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 TMEM8AQ9HCN3 771 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 GTSE1Q9NYZ3 720 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 RAB26Q9ULW5 256 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 AURKCQ9UQB9 309 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 NEU2Q9Y3R4 380 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 ZNF862O60290 1169 aa5.38□□□□□ -1.55
CSMD3-204ENST00000455883 PSMD4P55036 377 aaKnown RBP5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms