RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 ATP13A4Q4VNC1 1196 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 SEPT8Q92599 483 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 DDX27Q96GQ7 796 aaKnown RBP12.76□□□□□ -0.37
TCOF1-205ENST00000439160 HSD3B7Q9H2F3 369 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 RNPEPQ9H4A4 650 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 TASP1Q9H6P5 420 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 C10orf88Q9H8K7 445 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 DNPEPQ9ULA0 475 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 AP3B1O00203 1094 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 HMGCRP04035 888 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 MLH1P40692 756 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 MARSP56192 900 aaKnown RBP12.76□□□□□ -0.37
TCOF1-205ENST00000439160 STX3Q13277 289 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 DEFB106AQ8N104 65 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 FGD4Q96M96 766 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 TRPV6Q9H1D0 765 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 ECT2Q9H8V3 914 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 SAE1Q9UBE0 346 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-205ENST00000439160 USP15Q9Y4E8 981 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-205ENST00000439160 FARP1Q9Y4F1 1045 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-205ENST00000439160 ATRNL1Q5VV63 1379 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 ARF4P18085 180 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-205ENST00000439160 AXLP30530 894 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 SCNN1GP51170 649 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 NFE2Q16621 373 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-205ENST00000439160 RGMBQ6NW40 437 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 FOXR2Q6PJQ5 311 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 UBP1Q9NZI7 540 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 SLC39A10Q9ULF5 831 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 TRPV2Q9Y5S1 764 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 RGPD5Q99666 1765 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 PSMD3O43242 534 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 FBXO21O94952 628 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 ALDH2P05091 517 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 DNAJB2P25686 324 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 IL1RL1Q01638 556 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 NT5DC4Q86YG4 428 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 SPDYE1Q8NFV5 336 aaPredicted RBP12.75□□□□□ -0.37
TCOF1-205ENST00000439160 CELF6Q96J87 481 aaKnown RBP12.75□□□□□ -0.37
TCOF1-205ENST00000439160 ELMO2Q96JJ3 720 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 SENP8Q96LD8 212 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 SERPINI1Q99574 410 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 FAM96AQ9H5X1 160 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 CPSF2Q9P2I0 782 aaKnown RBP12.75□□□□□ -0.37
TCOF1-205ENST00000439160 SH3BP1Q9Y3L3 701 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 M0R2N6 131 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 CASQ2O14958 399 aaPredicted RBP12.75□□□□□ -0.37
TCOF1-205ENST00000439160 ATP5HO75947 161 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 SLC2A3P11169 496 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 TGM2P21980 687 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 KDSRQ06136 332 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 MAMLD1Q13495 774 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 MORF4L2Q15014 288 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 C15orf59Q2T9L4 293 aaPredicted RBP12.75□□□□□ -0.37
TCOF1-205ENST00000439160 RFX8Q6ZV50 586 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 ATP6V0D2Q8N8Y2 350 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 SHISA4Q96DD7 197 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 SEC16BQ96JE7 1060 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 FRMD8Q9BZ67 464 aaPredicted RBP12.75□□□□□ -0.37
TCOF1-205ENST00000439160 FAM129AQ9BZQ8 928 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 PPCSQ9HAB8 311 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 DSEQ9UL01 958 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 SNCAIPQ9Y6H5 919 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 A0A0B4J269 797 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 RPLP2P05387 115 aaKnown RBP12.75□□□□□ -0.37
TCOF1-205ENST00000439160 ZCWPW2Q504Y3 356 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 C4orf22Q6V702 233 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 TTC30AQ86WT1 665 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 ARMC2Q8NEN0 867 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 KREMEN1Q96MU8 473 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 WWP1Q9H0M0 922 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 NUDT5Q9UKK9 219 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 ATP11BQ9Y2G3 1177 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 CDY2AQ9Y6F7 541 aa12.75□□□□□ -0.37
TCOF1-205ENST00000439160 SLC12A8A0AV02 714 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 ZNF263O14978 683 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 CHUKO15111 745 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 AMPD1P23109 780 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 INHBEP58166 350 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 RPL7AP62424 266 aaKnown RBP12.74□□□□□ -0.37
TCOF1-205ENST00000439160 ERMARDQ5T6L9 678 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 WSCD1Q658N2 575 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 ZNF280DQ6N043 979 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 SIAH1Q8IUQ4 282 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 SDCCAG3Q96C92 435 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 CCDC124Q96CT7 223 aaKnown RBP12.74□□□□□ -0.37
TCOF1-205ENST00000439160 FAM111AQ96PZ2 611 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 TSPYL2Q9H2G4 693 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-205ENST00000439160 F8W8V4 182 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 DNAJC6O75061 913 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 NDUFS3O75489 264 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 ALDH18A1P54886 795 aaKnown RBP12.74□□□□□ -0.37
TCOF1-205ENST00000439160 RIBC1Q8N443 379 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-205ENST00000439160 CAVIN3Q969G5 261 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 MFSD14AQ96MC6 490 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 FAM161BQ96MY7 647 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 GBP5Q96PP8 586 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 FRMD8P1Q9BZ68 369 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-205ENST00000439160 MTIF3Q9H2K0 278 aaKnown RBP12.74□□□□□ -0.37
TCOF1-205ENST00000439160 PIH1D1Q9NWS0 290 aaKnown RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms