RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 COPG1Q9Y678 874 aaKnown RBP12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 MMGT1Q8N4V1 131 aa12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 PPCSQ9HAB8 311 aa12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 MRGBPQ9NV56 204 aa12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 ARL2BPQ9Y2Y0 163 aa12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 LAMTOR4Q0VGL1 99 aa12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 STARD3Q14849 445 aa12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 SHROOM1Q2M3G4 852 aaPredicted RBP12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 EFL1Q7Z2Z2 1120 aaKnown RBP12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 CHP1Q99653 195 aa12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 APPL1Q9UKG1 709 aa12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 SETD1AO15047 1707 aaKnown RBP12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 GSTM1P09488 218 aa12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 GEMIN4P57678 1058 aaKnown RBP12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 ZNF284Q2VY69 593 aa12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 TIGD7Q6NT04 549 aaPredicted RBP12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 SLC44A2Q8IWA5 706 aaPredicted RBP12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 TEX9Q8N6V9 391 aa12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 ZNF512BQ96KM6 892 aaPredicted RBP12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 SRGNP10124 158 aa12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 NAMPTP43490 491 aa12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 RPS7P62081 194 aaKnown RBP12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 RBM12Q9NTZ6 932 aaKnown RBP12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 PCDHGA4Q9Y5G9 962 aa12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 SGCGQ13326 291 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 ACOX1Q15067 660 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 FAM167BQ9BTA0 163 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 THTPAQ9BU02 230 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 UBXN6Q9BZV1 441 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 MANSC1Q9H8J5 431 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 GPRC5CQ9NQ84 441 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 IFRD1O00458 451 aaPredicted RBP12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 TOMM70O94826 608 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 MAP3K6O95382 1288 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 ITIH2P19823 946 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 ACO1P21399 889 aaKnown RBP12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 TGM3Q08188 693 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 KAT2BQ92831 832 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 PXMP2Q9NR77 195 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 TMEM39AQ9NV64 488 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 AAR2Q9Y312 384 aaKnown RBP12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 AGTP01019 485 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 GPC1P35052 558 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 SF3B3Q15393 1217 aaKnown RBP12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 FUT11Q495W5 492 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 ZNF280DQ6N043 979 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 SHCBP1LQ9BZQ2 653 aa12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 UTP6Q9NYH9 597 aaKnown RBP12.46□□□□□ -0.42
CCDC88A-207ENST00000436346 NFICP08651 508 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 SERPINB5P36952 375 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 RPL10AP62906 217 aaKnown RBP12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 RDM1Q8NG50 284 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 DTX3LQ8TDB6 740 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 RHOBTB3O94955 611 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 RUNX1T1Q06455 604 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 C17orf75Q9HAS0 396 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 UBQLN1Q9UMX0 589 aaKnown RBP12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 NME5P56597 212 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 LRRC8DQ7L1W4 858 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 DDX28Q9NUL7 540 aaKnown RBP12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 SMARCAL1Q9NZC9 954 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 POLLQ9UGP5 575 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 MSH3P20585 1137 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 VSNL1P62760 191 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 STK4Q13043 487 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 TCEA2Q15560 299 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 POP1Q99575 1024 aaKnown RBP12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 AGPAT3Q9NRZ7 376 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 PLA2G6O60733 806 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 SNRPAP09012 282 aaKnown RBP12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 PYGMP11217 842 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 MRPS15P82914 257 aaKnown RBP12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 MRNIPQ6NTE8 343 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 SLC20A1Q8WUM9 679 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 EPB41L4AQ9HCS5 686 aaPredicted RBP12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 F8W810 466 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 PSMA3P25788 255 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 MAGEA9P43362 315 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 PLIN5Q00G26 463 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 TAAR1Q96RJ0 339 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 CAP2P40123 477 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 MPZL3Q6UWV2 235 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 ZDHHC15Q96MV8 337 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 NLNQ9BYT8 704 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 MTFR1LQ9H019 292 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 TDRKHQ9Y2W6 561 aaKnown RBP12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 DYRK1BQ9Y463 629 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 MGAT4DA6NG13 374 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 PDHXO00330 501 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 SUPT20HL2P0C7V6 817 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 RPA1P27694 616 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 MAPK1P28482 360 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 MAGEA4P43358 317 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 LHX1P48742 406 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 CNPY4Q8N129 248 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 C9orf72Q96LT7 481 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 OSMRQ99650 979 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 THUMPD3Q9BV44 507 aaKnown RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms