RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 M0QYT0 321 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 SLC4A1P02730 911 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 POLBP06746 335 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 CELF3Q5SZQ8 465 aaKnown RBP19.24■□□□□ 0.67
USP48-204ENST00000400301 BBS12Q6ZW61 710 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 SPATA24Q86W54 205 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 TRPM4Q8TD43 1214 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 SLC26A7Q8TE54 656 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 USP33Q8TEY7 942 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 TMEM237Q96Q45 408 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.24■□□□□ 0.67
USP48-204ENST00000400301 CPSF2Q9P2I0 782 aaKnown RBP19.24■□□□□ 0.67
USP48-204ENST00000400301 IRF6O14896 467 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 UNGP13051 313 aaPredicted RBP19.24■□□□□ 0.67
USP48-204ENST00000400301 CYP2F1P24903 491 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 POU5F1BQ06416 359 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 FAAP100Q0VG06 881 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 SH2D4BQ5SQS7 431 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 JOSD2Q8TAC2 188 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 KIF9Q9HAQ2 790 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 DFFAO00273 331 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 ITGAVP06756 1048 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 NPNTQ6UXI9 565 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 RGS9BPQ6ZS82 235 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 ACAD11Q709F0 780 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 SPDL1Q96EA4 605 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 TMEM109Q9BVC6 243 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 SLCO1B3Q9NPD5 702 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 ADGRA3Q8IWK6 1321 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 CTSHP09668 335 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 PAMP19021 973 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 BCAT1P54687 386 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 STX1BP61266 288 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 CYP1B1Q16678 543 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 HSDL1Q3SXM5 330 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 ABI1Q8IZP0 508 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 THEM5Q8N1Q8 247 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 LMO3Q8TAP4 145 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 OSMRQ99650 979 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 OSBPL7Q9BZF2 842 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 MYLK2Q9H1R3 596 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 RPS6KL1Q9Y6S9 549 aa19.24■□□□□ 0.67
USP48-204ENST00000400301 CXCL11O14625 94 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 TPD52P55327 224 aaPredicted RBP19.23■□□□□ 0.67
USP48-204ENST00000400301 TSPY1Q01534 308 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 HIC1Q14526 733 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 PTPN20Q4JDL3 420 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 KDELC2Q7Z4H8 507 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 PRPF39Q86UA1 669 aaKnown RBP19.23■□□□□ 0.67
USP48-204ENST00000400301 YIPF3Q9GZM5 350 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 SETD4Q9NVD3 440 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 GTSE1Q9NYZ3 720 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 TNFSF13BQ9Y275 285 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 FNDC3AQ9Y2H6 1198 aaKnown RBP19.23■□□□□ 0.67
USP48-204ENST00000400301 MYH1P12882 1939 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 CYP1A1P04798 512 aaPredicted RBP19.23■□□□□ 0.67
USP48-204ENST00000400301 RBL1P28749 1068 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 KCNJ2P63252 427 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 ACAP1Q15027 740 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 CAPRIN2Q6IMN6 1127 aaKnown RBP19.23■□□□□ 0.67
USP48-204ENST00000400301 ZNF516Q92618 1163 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 FIZ1Q96SL8 496 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 EPS15L1Q9UBC2 864 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 MYPNQ86TC9 1320 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 CBX6O95503 412 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 CREB1P16220 341 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 CUL3Q13618 768 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 KBTBD12Q3ZCT8 623 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 MTHFD1LQ6UB35 978 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 EXT2Q93063 718 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 OPTNQ96CV9 577 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 MTBPQ96DY7 904 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 PPP1R36Q96LQ0 422 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 TMEM120AQ9BXJ8 343 aa19.23■□□□□ 0.67
USP48-204ENST00000400301 ZNF214Q9UL59 606 aaPredicted RBP19.23■□□□□ 0.67
USP48-204ENST00000400301 MYH15Q9Y2K3 1946 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 SPRP35270 261 aaPredicted RBP19.22■□□□□ 0.67
USP48-204ENST00000400301 ARL2P36404 184 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 KLC3Q6P597 504 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 POLNQ7Z5Q5 900 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 TBCBQ99426 244 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 NUF2Q9BZD4 464 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 NAV1Q8NEY1 1877 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 MMRN1Q13201 1228 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 TRABD2AQ86V40 505 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 BBS5Q8N3I7 341 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 PPWD1Q96BP3 646 aaKnown RBP19.22■□□□□ 0.67
USP48-204ENST00000400301 RNF19AQ9NV58 838 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 GPRC5DQ9NZD1 345 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 LOC102724159A0A0B4J2E5 919 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 NCAM1P13591 858 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 FDFT1P37268 417 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 PNPLA4P41247 253 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 SERPINB4P48594 390 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 PWP2Q15269 919 aaKnown RBP19.22■□□□□ 0.67
USP48-204ENST00000400301 DNAL1Q4LDG9 190 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 TREML2Q5T2D2 321 aa19.22■□□□□ 0.67
USP48-204ENST00000400301 CPSF3Q9UKF6 684 aaKnown RBP19.22■□□□□ 0.67
USP48-204ENST00000400301 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.22■□□□□ 0.67
USP48-204ENST00000400301 TRIM33Q9UPN9 1127 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms