RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 ZBTB8OSQ8IWT0 167 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 CCDC33Q8N5R6 958 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 C1orf127Q8N9H9 656 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 VPS33BQ9H267 617 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 C19orf81C9J6K1 198 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 APOC4-APOC2K7ER74 178 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 TRUB2O95900 331 aaKnown RBP21.51■■□□□ 1.03
CLK3-202ENST00000395066 APOC2P02655 101 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 TROVE2P10155 538 aaKnown RBP eCLIP21.51■■□□□ 1.03
CLK3-202ENST00000395066 MUM1Q2TAK8 710 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 ZNF667Q5HYK9 610 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 FAM160B1Q5W0V3 765 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 C4orf50Q6ZRC1 276 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 DNERQ8NFT8 737 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 SPDYE1Q8NFV5 336 aaPredicted RBP21.51■■□□□ 1.03
CLK3-202ENST00000395066 KLRG1Q96E93 195 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 TSSK1BQ9BXA7 367 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 PGK2P07205 417 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 SERPINB3P29508 390 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 KLC1Q07866 573 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 TAZQ16635 292 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 MPZL3Q6UWV2 235 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 CDHR3Q6ZTQ4 885 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 TTC13Q8NBP0 860 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 SEPT1Q8WYJ6 367 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 MECRQ9BV79 373 aa21.51■■□□□ 1.03
CLK3-202ENST00000395066 E5RJQ4 531 aa21.5■■□□□ 1.03
CLK3-202ENST00000395066 SESN3P58005 492 aa21.5■■□□□ 1.03
CLK3-202ENST00000395066 KHDC1Q4VXA5 237 aaKnown RBP21.5■■□□□ 1.03
CLK3-202ENST00000395066 TRPM4Q8TD43 1214 aa21.5■■□□□ 1.03
CLK3-202ENST00000395066 ADPGKQ9BRR6 497 aa21.5■■□□□ 1.03
CLK3-202ENST00000395066 SSU72Q9NP77 194 aaKnown RBP21.5■■□□□ 1.03
CLK3-202ENST00000395066 STOML1Q9UBI4 398 aa21.5■■□□□ 1.03
CLK3-202ENST00000395066 TUBP50607 506 aa21.5■■□□□ 1.03
CLK3-202ENST00000395066 MXRA7P84157 204 aa21.5■■□□□ 1.03
CLK3-202ENST00000395066 ROR1Q01973 937 aa21.5■■□□□ 1.03
CLK3-202ENST00000395066 GRM1Q13255 1194 aa21.5■■□□□ 1.03
CLK3-202ENST00000395066 IER5Q5VY09 327 aa21.5■■□□□ 1.03
CLK3-202ENST00000395066 DSTYKQ6XUX3 929 aa21.5■■□□□ 1.03
CLK3-202ENST00000395066 CTAGE3PQ8IX95 158 aa21.5■■□□□ 1.03
CLK3-202ENST00000395066 CMASQ8NFW8 434 aaPredicted RBP21.5■■□□□ 1.03
CLK3-202ENST00000395066 COPS5Q92905 334 aa21.5■■□□□ 1.03
CLK3-202ENST00000395066 SH3GL3Q99963 347 aa21.5■■□□□ 1.03
CLK3-202ENST00000395066 CADM1Q9BY67 442 aaKnown RBP21.5■■□□□ 1.03
CLK3-202ENST00000395066 CDT1Q9H211 546 aa21.5■■□□□ 1.03
CLK3-202ENST00000395066 H7C0C1 242 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 GPR25O00155 361 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 RNF8O76064 485 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 ATP5OP48047 213 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 PTPN11Q06124 597 aaPredicted RBP21.49■■□□□ 1.03
CLK3-202ENST00000395066 LBRQ14739 615 aaKnown RBP21.49■■□□□ 1.03
CLK3-202ENST00000395066 FAF2Q96CS3 445 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 CYTH2Q99418 400 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 SYT15Q9BQS2 421 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 TMEM120AQ9BXJ8 343 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 LHX5Q9H2C1 402 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 ZNF395Q9H8N7 513 aaPredicted RBP21.49■■□□□ 1.03
CLK3-202ENST00000395066 KCNK13Q9HB14 408 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 PTPRHQ9HD43 1115 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 RAB6BQ9NRW1 208 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 ARMCX1Q9P291 453 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 HEY1Q9Y5J3 304 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 IKBKGQ9Y6K9 419 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 SPDYE5A6NIY4 337 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 CXorf49A8MYA2 514 aaPredicted RBP21.49■■□□□ 1.03
CLK3-202ENST00000395066 NVLO15381 856 aaKnown RBP21.49■■□□□ 1.03
CLK3-202ENST00000395066 UGT1A9O60656 530 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 FESP07332 822 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 MAP1SQ66K74 1059 aaPredicted RBP21.49■■□□□ 1.03
CLK3-202ENST00000395066 JADE1Q6IE81 842 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 CYP4V2Q6ZWL3 525 aaPredicted RBP21.49■■□□□ 1.03
CLK3-202ENST00000395066 APBB1IPQ7Z5R6 666 aaPredicted RBP21.49■■□□□ 1.03
CLK3-202ENST00000395066 ZNF333Q96JL9 665 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 UGT1A7Q9HAW7 530 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 UGT1A10Q9HAW8 530 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 UGT1A8Q9HAW9 530 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 NMRK1Q9NWW6 199 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 EFR3BQ9Y2G0 817 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 ANK1P16157 1881 aa21.49■■□□□ 1.03
CLK3-202ENST00000395066 TM9SF1O15321 606 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 MED7O43513 233 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 CCDC22O60826 627 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 INHBAP08476 426 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 RGS7P49802 495 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 IGBP1P78318 339 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 ZNF200P98182 395 aaPredicted RBP21.48■■□□□ 1.03
CLK3-202ENST00000395066 CCDC6Q16204 474 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 THEMIS2Q5TEJ8 643 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 TMEM154Q6P9G4 183 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 PPM1NQ8N819 430 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 HEXIM2Q96MH2 286 aaKnown RBP21.48■■□□□ 1.03
CLK3-202ENST00000395066 TRIM55Q9BYV6 548 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 LACTBL1A8MY62 500 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 AHCYL1O43865 530 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 PROZP22891 400 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 RXRBP28702 533 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 VHLP40337 213 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 ETV4P43268 484 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 DALRD3Q5D0E6 543 aaKnown RBP21.48■■□□□ 1.03
CLK3-202ENST00000395066 ZC3H12AQ5D1E8 599 aaKnown RBP21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms