RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 TTC25Q96NG3 672 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 PAIP2Q9BPZ3 127 aaKnown RBP13.98□□□□□ -0.17
CCDC3-202ENST00000378839 CCDC77Q9BR77 488 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 DHRS4Q9BTZ2 278 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 XPO7Q9UIA9 1087 aaKnown RBP13.98□□□□□ -0.17
CCDC3-202ENST00000378839 MAP2K2P36507 400 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 XRCC4Q13426 336 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 NOMO1Q15155 1222 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 C3orf62Q6ZUJ4 267 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 GPR142Q7Z601 462 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 CCDC33Q8N5R6 958 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 ANKS4BQ8N8V4 417 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 FBF1Q8TES7 1133 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 SLC35F5Q8WV83 523 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 PTPN18Q99952 460 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 NXF3Q9H4D5 531 aaKnown RBP13.98□□□□□ -0.17
CCDC3-202ENST00000378839 PLAC1Q9HBJ0 212 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 KLC4Q9NSK0 619 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 HGSO14964 777 aaPredicted RBP13.97□□□□□ -0.17
CCDC3-202ENST00000378839 SPTLC1O15269 473 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 DNAJC8O75937 253 aaPredicted RBP13.97□□□□□ -0.17
CCDC3-202ENST00000378839 RNF8O76064 485 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 AKAP5P24588 427 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 LMO2P25791 158 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 SOWAHAQ2M3V2 549 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 SNX27Q96L92 541 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 CXorf56Q9H5V9 222 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 ASNSD1Q9NWL6 643 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 DNAJC3Q13217 504 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 DUSP28Q4G0W2 176 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 ALKAL1Q6UXT8 129 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 SPATA21Q7Z572 469 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 RIBC1Q8N443 379 aaPredicted RBP13.97□□□□□ -0.17
CCDC3-202ENST00000378839 C7orf31Q8N865 590 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 TTC13Q8NBP0 860 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 PCDH19Q8TAB3 1148 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 RNF157Q96PX1 679 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 OSMRQ99650 979 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 SLC4A5Q9BY07 1137 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 RNF39Q9H2S5 420 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 CD248Q9HCU0 757 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 CCL15-CCL14A0A0B4J2E2 113 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 PRPF4O43172 522 aaKnown RBP eCLIP13.97□□□□□ -0.17
CCDC3-202ENST00000378839 HDAC4P56524 1084 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 BASP1P80723 227 aaKnown RBP13.97□□□□□ -0.17
CCDC3-202ENST00000378839 CCL15Q16663 113 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 BBS9Q3SYG4 887 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 CYB5D1Q6P9G0 228 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 ARHGEF18Q6ZSZ5 1173 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 ECHDC2Q86YB7 292 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 OR6J1Q8NGC5 347 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 PYROXD1Q8WU10 500 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 DCAKDQ8WVC6 231 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 KLF6Q99612 283 aaPredicted RBP13.97□□□□□ -0.17
CCDC3-202ENST00000378839 MIS12Q9H081 205 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 RSAD1Q9HA92 442 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 CHMP2BQ9UQN3 213 aa13.97□□□□□ -0.17
CCDC3-202ENST00000378839 C1QAP02745 245 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 P4HA1P13674 534 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 KRT15P19012 456 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 GEMIN4P57678 1058 aaKnown RBP13.96□□□□□ -0.17
CCDC3-202ENST00000378839 ZNF200P98182 395 aaPredicted RBP13.96□□□□□ -0.17
CCDC3-202ENST00000378839 ACVR2BQ13705 512 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 GRB14Q14449 540 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 KCNJ11Q14654 390 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 ACAP1Q15027 740 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 MTFR1Q15390 333 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 FAXCQ5TGI0 409 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 SCYL2Q6P3W7 929 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 SUGP1Q8IWZ8 645 aaKnown RBP13.96□□□□□ -0.17
CCDC3-202ENST00000378839 ZNF276Q8N554 614 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 FAM172AQ8WUF8 416 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 KBTBD7Q8WVZ9 684 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 NKIRAS1Q9NYS0 192 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 TRIM33Q9UPN9 1127 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 NR2E3Q9Y5X4 410 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 CCDC130P13994 396 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 ELK3P41970 407 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 DARS2Q6PI48 645 aaKnown RBP13.96□□□□□ -0.17
CCDC3-202ENST00000378839 TMEM110Q86TL2 294 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 TRIM56Q9BRZ2 755 aaKnown RBP13.96□□□□□ -0.17
CCDC3-202ENST00000378839 SNRNP25Q9BV90 132 aaKnown RBP13.96□□□□□ -0.17
CCDC3-202ENST00000378839 PCDH18Q9HCL0 1135 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 NGRNQ9NPE2 291 aaKnown RBP13.96□□□□□ -0.17
CCDC3-202ENST00000378839 SLC5A4Q9NY91 659 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 KLK14Q9P0G3 267 aa13.96□□□□□ -0.17
CCDC3-202ENST00000378839 GOLGA8RI6L899 631 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 KRT4P19013 534 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 ARL4CP56559 192 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 NCALDP61601 193 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 SLC10A2Q12908 348 aaPredicted RBP13.95□□□□□ -0.18
CCDC3-202ENST00000378839 SMYD5Q6GMV2 418 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 ZNF467Q7Z7K2 595 aaPredicted RBP13.95□□□□□ -0.18
CCDC3-202ENST00000378839 PCGF5Q86SE9 256 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 DPP9Q86TI2 863 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 PRPF39Q86UA1 669 aaKnown RBP13.95□□□□□ -0.18
CCDC3-202ENST00000378839 P3H4Q92791 437 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 PAFAH2Q99487 392 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 FRMD8P1Q9BZ68 369 aaPredicted RBP13.95□□□□□ -0.18
CCDC3-202ENST00000378839 NSRP1Q9H0G5 558 aaKnown RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms