RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 CMASQ8NFW8 434 aaPredicted RBP13.08□□□□□ -0.32
VRK3-202ENST00000377011 ZNF461Q8TAF7 563 aa13.08□□□□□ -0.32
VRK3-202ENST00000377011 RFFLQ8WZ73 363 aa13.08□□□□□ -0.32
VRK3-202ENST00000377011 LPIN3Q9BQK8 851 aa13.08□□□□□ -0.32
VRK3-202ENST00000377011 SYT11Q9BT88 431 aa13.08□□□□□ -0.32
VRK3-202ENST00000377011 PLEKHA4Q9H4M7 779 aa13.08□□□□□ -0.32
VRK3-202ENST00000377011 DNMT3BQ9UBC3 853 aaKnown RBP13.08□□□□□ -0.32
VRK3-202ENST00000377011 KPNA7A9QM74 516 aa13.07□□□□□ -0.32
VRK3-202ENST00000377011 F8VZ95 297 aa13.07□□□□□ -0.32
VRK3-202ENST00000377011 DDX3XO00571 662 aaKnown RBP eCLIP13.07□□□□□ -0.323e-12■■□□□ 11.9
VRK3-202ENST00000377011 XPOTO43592 962 aaKnown RBP13.07□□□□□ -0.32
VRK3-202ENST00000377011 ACAT1P24752 427 aaKnown RBP13.07□□□□□ -0.32
VRK3-202ENST00000377011 FMO5P49326 533 aa13.07□□□□□ -0.32
VRK3-202ENST00000377011 HADHBP55084 474 aaKnown RBP13.07□□□□□ -0.32
VRK3-202ENST00000377011 GNGT1P63211 74 aa13.07□□□□□ -0.32
VRK3-202ENST00000377011 SLC5A9Q2M3M2 681 aa13.07□□□□□ -0.32
VRK3-202ENST00000377011 OVOS1Q6IE37 1185 aa13.07□□□□□ -0.32
VRK3-202ENST00000377011 MAATS1Q7Z4T9 603 aa13.07□□□□□ -0.32
VRK3-202ENST00000377011 GPIHBP1Q8IV16 184 aa13.07□□□□□ -0.32
VRK3-202ENST00000377011 ARFGAP2Q8N6H7 521 aa13.07□□□□□ -0.32
VRK3-202ENST00000377011 CCDC26Q8TAB7 109 aa13.07□□□□□ -0.32
VRK3-202ENST00000377011 ITFG1Q8TB96 612 aa13.07□□□□□ -0.32
VRK3-202ENST00000377011 RSAD2Q8WXG1 361 aa13.07□□□□□ -0.32
VRK3-202ENST00000377011 SEC14L1Q92503 715 aa13.07□□□□□ -0.32
VRK3-202ENST00000377011 ARL8AQ96BM9 186 aa13.07□□□□□ -0.32
VRK3-202ENST00000377011 HES6Q96HZ4 224 aa13.07□□□□□ -0.32
VRK3-202ENST00000377011 NAP1L3Q99457 506 aaPredicted RBP13.07□□□□□ -0.32
VRK3-202ENST00000377011 FAM50BQ9Y247 325 aa13.07□□□□□ -0.32
VRK3-202ENST00000377011 FRMD4BQ9Y2L6 1034 aa13.07□□□□□ -0.32
VRK3-202ENST00000377011 SLC27A5Q9Y2P5 690 aa13.07□□□□□ -0.32
VRK3-202ENST00000377011 P4HA2O15460 535 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 CEP104O60308 925 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 CYP11A1P05108 521 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 TMEM191BP0C7N4 346 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 ATF2P15336 505 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 CCR2P41597 374 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 MTHFRP42898 656 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 BFSP1Q12934 665 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 TDRD10Q5VZ19 366 aaKnown RBP13.06□□□□□ -0.32
VRK3-202ENST00000377011 ZNF280DQ6N043 979 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 C15orf39Q6ZRI6 1047 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 B4GALNT4Q76KP1 1039 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 NT5DC3Q86UY8 548 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 HS6ST3Q8IZP7 471 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 APPL2Q8NEU8 664 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 PARD3BQ8TEW8 1205 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 IFT81Q8WYA0 676 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 ATP6V1G3Q96LB4 118 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 RIPOR3Q96MK2 946 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 TSPAN18Q96SJ8 248 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 CGRRF1Q99675 332 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 CYP4F11Q9HBI6 524 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 WDR6Q9NNW5 1121 aaKnown RBP13.06□□□□□ -0.32
VRK3-202ENST00000377011 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.06□□□□□ -0.323e-6■■■■■ 88.5
VRK3-202ENST00000377011 LIMD1Q9UGP4 676 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 RAPGEFL1Q9UHV5 662 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 AMFRQ9UKV5 643 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 POLIQ9UNA4 740 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 PACSIN2Q9UNF0 486 aaPredicted RBP13.06□□□□□ -0.32
VRK3-202ENST00000377011 DMDP11532 3685 aa13.06□□□□□ -0.32
VRK3-202ENST00000377011 GOLGA6L10A6NI86 522 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 PI4K2BG5E9Z4 385 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 MAPK13O15264 365 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 VNN1O95497 513 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 FAM153BP0C7A2 387 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 TRIM49P0CI25 452 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 TRIM49CP0CI26 452 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 CPB1P15086 417 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 TYMPP19971 482 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 SNRPFP62306 86 aaKnown RBP13.05□□□□□ -0.32
VRK3-202ENST00000377011 CREMQ03060 361 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 DUSP4Q13115 394 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 BIRC3Q13489 604 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 SOWAHAQ2M3V2 549 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 FAM153CQ494X1 144 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 PPM1LQ5SGD2 360 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 WDR49Q8IV35 697 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 OLIG1Q8TAK6 271 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 KBTBD7Q8WVZ9 684 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 TCEAL4Q96EI5 215 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 RHOBTB2Q9BYZ6 727 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 FAM114A2Q9NRY5 505 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 ZDHHC7Q9NXF8 308 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 APEX2Q9UBZ4 518 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 FAM153AQ9UHL3 310 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 SNX9Q9Y5X1 595 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 COL4A3Q01955 1670 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 CLUHO75153 1309 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 MTMR11A4FU01 709 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 H7C4K7 107 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 KIAA0391O15091 583 aaKnown RBP13.05□□□□□ -0.32
VRK3-202ENST00000377011 PMM2O15305 246 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 ATP2C2O75185 946 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 ODC1P11926 461 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 TNNI1P19237 187 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 LMO2P25791 158 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 ECHS1P30084 290 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 GALCP54803 685 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 MYL6P60660 151 aa13.05□□□□□ -0.32
VRK3-202ENST00000377011 DUOXA2Q1HG44 320 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms